Gene : AL7G16900 A. lyrata v2.1

Defline:  (1 of 2) PTHR11685:SF119 - E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED Genomic Order:  663
Name:  ? AL7G16900 Secondary Identifier:  ? PAC:35937247

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G16900 0.5kb upstream 0.5kb upstream 3391   true scaffold_7: 2817146-2820536 Arabidopsis lyrata
AL7G16900 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 2820037-2820536 Arabidopsis lyrata
AL7G16900 0.5kb downstream 0.5kb downstream 3391   true scaffold_7: 2816646-2820036 Arabidopsis lyrata
AL7G16900 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 2816646-2817145 Arabidopsis lyrata
AL7G16900 1.0kb upstream 1.0kb upstream 3891   true scaffold_7: 2817146-2821036 Arabidopsis lyrata
AL7G16900 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 2820037-2821036 Arabidopsis lyrata
AL7G16900 1.0kb downstream 1.0kb downstream 3891   true scaffold_7: 2816146-2820036 Arabidopsis lyrata
AL7G16900 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 2816146-2817145 Arabidopsis lyrata
AL7G16900 2.0kb upstream 2.0kb upstream 4891   true scaffold_7: 2817146-2822036 Arabidopsis lyrata
AL7G16900 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 2820037-2822036 Arabidopsis lyrata
AL7G16900 2.0kb downstream 2.0kb downstream 4891   true scaffold_7: 2815146-2820036 Arabidopsis lyrata
AL7G16900 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 2815146-2817145 Arabidopsis lyrata
AL7G16900 5.0kb upstream 5.0kb upstream 7891   true scaffold_7: 2817146-2825036 Arabidopsis lyrata
AL7G16900 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 2820037-2825036 Arabidopsis lyrata
AL7G16900 5.0kb downstream 5.0kb downstream 7891   true scaffold_7: 2812146-2820036 Arabidopsis lyrata
AL7G16900 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 2812146-2817145 Arabidopsis lyrata
AL7G16900 10.0kb upstream 10.0kb upstream 12891   true scaffold_7: 2817146-2830036 Arabidopsis lyrata
AL7G16900 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 2820037-2830036 Arabidopsis lyrata
AL7G16900 10.0kb downstream 10.0kb downstream 12891   true scaffold_7: 2807146-2820036 Arabidopsis lyrata
AL7G16900 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 2807146-2817145 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366411 5261 Brassicaceae View MSA
123837734 5264 Brassicales-Malvales View MSA
124338764 5266 SBM View MSA
124239816 5268 Malvidae View MSA
124064990 5270 Rosid View MSA
123740641 5271 Pentapetalae View MSA
122792906 5272 Eudicot View MSA
122046859 5273 Angiosperm View MSA
121343815 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain