Gene : AL7G25730 A. lyrata v2.1

Defline:  (1 of 2) PTHR10314:SF98 - TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED Genomic Order:  1509
Name:  ? AL7G25730 Secondary Identifier:  ? PAC:35936750

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRPSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G25730 0.5kb upstream 0.5kb upstream 2674   true scaffold_7: 6397925-6400598 Arabidopsis lyrata
AL7G25730 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 6400099-6400598 Arabidopsis lyrata
AL7G25730 0.5kb downstream 0.5kb downstream 2674   true scaffold_7: 6397425-6400098 Arabidopsis lyrata
AL7G25730 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 6397425-6397924 Arabidopsis lyrata
AL7G25730 1.0kb upstream 1.0kb upstream 3174   true scaffold_7: 6397925-6401098 Arabidopsis lyrata
AL7G25730 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 6400099-6401098 Arabidopsis lyrata
AL7G25730 1.0kb downstream 1.0kb downstream 3174   true scaffold_7: 6396925-6400098 Arabidopsis lyrata
AL7G25730 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 6396925-6397924 Arabidopsis lyrata
AL7G25730 2.0kb upstream 2.0kb upstream 4174   true scaffold_7: 6397925-6402098 Arabidopsis lyrata
AL7G25730 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 6400099-6402098 Arabidopsis lyrata
AL7G25730 2.0kb downstream 2.0kb downstream 4174   true scaffold_7: 6395925-6400098 Arabidopsis lyrata
AL7G25730 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 6395925-6397924 Arabidopsis lyrata
AL7G25730 5.0kb upstream 5.0kb upstream 7174   true scaffold_7: 6397925-6405098 Arabidopsis lyrata
AL7G25730 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 6400099-6405098 Arabidopsis lyrata
AL7G25730 5.0kb downstream 5.0kb downstream 7174   true scaffold_7: 6392925-6400098 Arabidopsis lyrata
AL7G25730 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 6392925-6397924 Arabidopsis lyrata
AL7G25730 10.0kb upstream 10.0kb upstream 12174   true scaffold_7: 6397925-6410098 Arabidopsis lyrata
AL7G25730 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 6400099-6410098 Arabidopsis lyrata
AL7G25730 10.0kb downstream 10.0kb downstream 12174   true scaffold_7: 6387925-6400098 Arabidopsis lyrata
AL7G25730 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 6387925-6397924 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360567 5261 Brassicaceae View MSA
123837173 5264 Brassicales-Malvales View MSA
124344388 5266 SBM View MSA
124250400 5268 Malvidae View MSA
124062384 5270 Rosid View MSA
123745831 5271 Pentapetalae View MSA
122787401 5272 Eudicot View MSA
122044231 5273 Angiosperm View MSA
121344651 5274 Embryophyte View MSA
123423776 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain