Gene : AL7G52160 A. lyrata v2.1

Defline:  (1 of 4) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  3904
Name:  ? AL7G52160 Secondary Identifier:  ? PAC:35937296

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata CALVIN-PWY Arabidopsis lyrata pathologic  
Alyrata PHOTOALL-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-5723 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G52160 0.5kb upstream 0.5kb upstream 1575   true scaffold_7: 23997327-23998901 Arabidopsis lyrata
AL7G52160 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 23997327-23997826 Arabidopsis lyrata
AL7G52160 0.5kb downstream 0.5kb downstream 1575   true scaffold_7: 23997827-23999401 Arabidopsis lyrata
AL7G52160 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 23998902-23999401 Arabidopsis lyrata
AL7G52160 1.0kb upstream 1.0kb upstream 2075   true scaffold_7: 23996827-23998901 Arabidopsis lyrata
AL7G52160 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 23996827-23997826 Arabidopsis lyrata
AL7G52160 1.0kb downstream 1.0kb downstream 2075   true scaffold_7: 23997827-23999901 Arabidopsis lyrata
AL7G52160 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 23998902-23999901 Arabidopsis lyrata
AL7G52160 2.0kb upstream 2.0kb upstream 3075   true scaffold_7: 23995827-23998901 Arabidopsis lyrata
AL7G52160 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 23995827-23997826 Arabidopsis lyrata
AL7G52160 2.0kb downstream 2.0kb downstream 3075   true scaffold_7: 23997827-24000901 Arabidopsis lyrata
AL7G52160 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 23998902-24000901 Arabidopsis lyrata
AL7G52160 5.0kb upstream 5.0kb upstream 6075   true scaffold_7: 23992827-23998901 Arabidopsis lyrata
AL7G52160 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 23992827-23997826 Arabidopsis lyrata
AL7G52160 5.0kb downstream 5.0kb downstream 6075   true scaffold_7: 23997827-24003901 Arabidopsis lyrata
AL7G52160 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 23998902-24003901 Arabidopsis lyrata
AL7G52160 10.0kb upstream 10.0kb upstream 11075   true scaffold_7: 23987827-23998901 Arabidopsis lyrata
AL7G52160 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 23987827-23997826 Arabidopsis lyrata
AL7G52160 10.0kb downstream 10.0kb downstream 11075   true scaffold_7: 23997827-24008901 Arabidopsis lyrata
AL7G52160 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 23998902-24008901 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380509 5261 Brassicaceae View MSA
123836682 5264 Brassicales-Malvales View MSA
124340616 5266 SBM View MSA
124250367 5268 Malvidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain