Gene : AL8G20800 A. lyrata v2.1

Defline:  (1 of 3) PTHR31375:SF37 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED Genomic Order:  931
Name:  ? AL8G20800 Secondary Identifier:  ? PAC:35948047

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G20800 0.5kb upstream 0.5kb upstream 2259   true scaffold_8: 11294599-11296857 Arabidopsis lyrata
AL8G20800 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 11296358-11296857 Arabidopsis lyrata
AL8G20800 0.5kb downstream 0.5kb downstream 2259   true scaffold_8: 11294099-11296357 Arabidopsis lyrata
AL8G20800 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 11294099-11294598 Arabidopsis lyrata
AL8G20800 1.0kb upstream 1.0kb upstream 2759   true scaffold_8: 11294599-11297357 Arabidopsis lyrata
AL8G20800 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 11296358-11297357 Arabidopsis lyrata
AL8G20800 1.0kb downstream 1.0kb downstream 2759   true scaffold_8: 11293599-11296357 Arabidopsis lyrata
AL8G20800 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 11293599-11294598 Arabidopsis lyrata
AL8G20800 2.0kb upstream 2.0kb upstream 3759   true scaffold_8: 11294599-11298357 Arabidopsis lyrata
AL8G20800 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 11296358-11298357 Arabidopsis lyrata
AL8G20800 2.0kb downstream 2.0kb downstream 3759   true scaffold_8: 11292599-11296357 Arabidopsis lyrata
AL8G20800 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 11292599-11294598 Arabidopsis lyrata
AL8G20800 5.0kb upstream 5.0kb upstream 6759   true scaffold_8: 11294599-11301357 Arabidopsis lyrata
AL8G20800 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 11296358-11301357 Arabidopsis lyrata
AL8G20800 5.0kb downstream 5.0kb downstream 6759   true scaffold_8: 11289599-11296357 Arabidopsis lyrata
AL8G20800 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 11289599-11294598 Arabidopsis lyrata
AL8G20800 10.0kb upstream 10.0kb upstream 11759   true scaffold_8: 11294599-11306357 Arabidopsis lyrata
AL8G20800 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 11296358-11306357 Arabidopsis lyrata
AL8G20800 10.0kb downstream 10.0kb downstream 11759   true scaffold_8: 11284599-11296357 Arabidopsis lyrata
AL8G20800 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 11284599-11294598 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376211 5261 Brassicaceae View MSA
123841196 5264 Brassicales-Malvales View MSA
124349703 5266 SBM View MSA
124252748 5268 Malvidae View MSA
124074380 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain