Gene : AL8G18180 A. lyrata v2.1

Defline:  (1 of 16) 2.3.1.133 - Shikimate O-hydroxycinnamoyltransferase Genomic Order:  733
Name:  ? AL8G18180 Secondary Identifier:  ? PAC:35948495

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-361 Arabidopsis lyrata pathologic  
Alyrata PWY-6039 Arabidopsis lyrata pathologic  
Alyrata PWY-6040 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G18180 0.5kb upstream 0.5kb upstream 2370   true scaffold_8: 5694513-5696882 Arabidopsis lyrata
AL8G18180 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 5696383-5696882 Arabidopsis lyrata
AL8G18180 0.5kb downstream 0.5kb downstream 2370   true scaffold_8: 5694013-5696382 Arabidopsis lyrata
AL8G18180 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 5694013-5694512 Arabidopsis lyrata
AL8G18180 1.0kb upstream 1.0kb upstream 2870   true scaffold_8: 5694513-5697382 Arabidopsis lyrata
AL8G18180 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 5696383-5697382 Arabidopsis lyrata
AL8G18180 1.0kb downstream 1.0kb downstream 2870   true scaffold_8: 5693513-5696382 Arabidopsis lyrata
AL8G18180 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 5693513-5694512 Arabidopsis lyrata
AL8G18180 2.0kb upstream 2.0kb upstream 3870   true scaffold_8: 5694513-5698382 Arabidopsis lyrata
AL8G18180 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 5696383-5698382 Arabidopsis lyrata
AL8G18180 2.0kb downstream 2.0kb downstream 3870   true scaffold_8: 5692513-5696382 Arabidopsis lyrata
AL8G18180 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 5692513-5694512 Arabidopsis lyrata
AL8G18180 5.0kb upstream 5.0kb upstream 6870   true scaffold_8: 5694513-5701382 Arabidopsis lyrata
AL8G18180 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 5696383-5701382 Arabidopsis lyrata
AL8G18180 5.0kb downstream 5.0kb downstream 6870   true scaffold_8: 5689513-5696382 Arabidopsis lyrata
AL8G18180 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 5689513-5694512 Arabidopsis lyrata
AL8G18180 10.0kb upstream 10.0kb upstream 11870   true scaffold_8: 5694513-5706382 Arabidopsis lyrata
AL8G18180 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 5696383-5706382 Arabidopsis lyrata
AL8G18180 10.0kb downstream 10.0kb downstream 11870   true scaffold_8: 5684513-5696382 Arabidopsis lyrata
AL8G18180 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 5684513-5694512 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364120 5261 Brassicaceae View MSA
123837047 5264 Brassicales-Malvales View MSA
124344144 5266 SBM View MSA
124238828 5268 Malvidae View MSA
124068484 5270 Rosid View MSA
123747860 5271 Pentapetalae View MSA
122791254 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain