Gene : AL8G16290 A. lyrata v2.1

Defline:  (1 of 1) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  570
Name:  ? AL8G16290 Secondary Identifier:  ? PAC:35948657

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-4361 Arabidopsis lyrata pathologic  
Alyrata PWY-7270 Arabidopsis lyrata pathologic  
Alyrata PWY-7528 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G16290 0.5kb upstream 0.5kb upstream 2035   true scaffold_8: 3931967-3934001 Arabidopsis lyrata
AL8G16290 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 3931967-3932466 Arabidopsis lyrata
AL8G16290 0.5kb downstream 0.5kb downstream 2035   true scaffold_8: 3932467-3934501 Arabidopsis lyrata
AL8G16290 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 3934002-3934501 Arabidopsis lyrata
AL8G16290 1.0kb upstream 1.0kb upstream 2535   true scaffold_8: 3931467-3934001 Arabidopsis lyrata
AL8G16290 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 3931467-3932466 Arabidopsis lyrata
AL8G16290 1.0kb downstream 1.0kb downstream 2535   true scaffold_8: 3932467-3935001 Arabidopsis lyrata
AL8G16290 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 3934002-3935001 Arabidopsis lyrata
AL8G16290 2.0kb upstream 2.0kb upstream 3535   true scaffold_8: 3930467-3934001 Arabidopsis lyrata
AL8G16290 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 3930467-3932466 Arabidopsis lyrata
AL8G16290 2.0kb downstream 2.0kb downstream 3535   true scaffold_8: 3932467-3936001 Arabidopsis lyrata
AL8G16290 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 3934002-3936001 Arabidopsis lyrata
AL8G16290 5.0kb upstream 5.0kb upstream 6535   true scaffold_8: 3927467-3934001 Arabidopsis lyrata
AL8G16290 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 3927467-3932466 Arabidopsis lyrata
AL8G16290 5.0kb downstream 5.0kb downstream 6535   true scaffold_8: 3932467-3939001 Arabidopsis lyrata
AL8G16290 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 3934002-3939001 Arabidopsis lyrata
AL8G16290 10.0kb upstream 10.0kb upstream 11535   true scaffold_8: 3922467-3934001 Arabidopsis lyrata
AL8G16290 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 3922467-3932466 Arabidopsis lyrata
AL8G16290 10.0kb downstream 10.0kb downstream 11535   true scaffold_8: 3932467-3944001 Arabidopsis lyrata
AL8G16290 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 3934002-3944001 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370454 5261 Brassicaceae View MSA
123834672 5264 Brassicales-Malvales View MSA
124342820 5266 SBM View MSA
124240096 5268 Malvidae View MSA
124070684 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain