Gene : AL8G17050 A. lyrata v2.1

Defline:  (1 of 3) K00025 - malate dehydrogenase (MDH1) Genomic Order:  632
Name:  ? AL8G17050 Secondary Identifier:  ? PAC:35949184

Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata GLUCONEO-PWY Arabidopsis lyrata pathologic  
Alyrata GLYOXYLATE-BYPASS Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PWY-561 Arabidopsis lyrata pathologic  
Alyrata PWY-5690 Arabidopsis lyrata pathologic  
Alyrata PWY66-399 Arabidopsis lyrata pathologic  
Alyrata PWY-7115 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G17050 0.5kb upstream 0.5kb upstream 3145   true scaffold_8: 4490812-4493956 Arabidopsis lyrata
AL8G17050 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 4493457-4493956 Arabidopsis lyrata
AL8G17050 0.5kb downstream 0.5kb downstream 3145   true scaffold_8: 4490312-4493456 Arabidopsis lyrata
AL8G17050 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 4490312-4490811 Arabidopsis lyrata
AL8G17050 1.0kb upstream 1.0kb upstream 3645   true scaffold_8: 4490812-4494456 Arabidopsis lyrata
AL8G17050 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 4493457-4494456 Arabidopsis lyrata
AL8G17050 1.0kb downstream 1.0kb downstream 3645   true scaffold_8: 4489812-4493456 Arabidopsis lyrata
AL8G17050 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 4489812-4490811 Arabidopsis lyrata
AL8G17050 2.0kb upstream 2.0kb upstream 4645   true scaffold_8: 4490812-4495456 Arabidopsis lyrata
AL8G17050 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 4493457-4495456 Arabidopsis lyrata
AL8G17050 2.0kb downstream 2.0kb downstream 4645   true scaffold_8: 4488812-4493456 Arabidopsis lyrata
AL8G17050 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 4488812-4490811 Arabidopsis lyrata
AL8G17050 5.0kb upstream 5.0kb upstream 7645   true scaffold_8: 4490812-4498456 Arabidopsis lyrata
AL8G17050 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 4493457-4498456 Arabidopsis lyrata
AL8G17050 5.0kb downstream 5.0kb downstream 7645   true scaffold_8: 4485812-4493456 Arabidopsis lyrata
AL8G17050 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 4485812-4490811 Arabidopsis lyrata
AL8G17050 10.0kb upstream 10.0kb upstream 12645   true scaffold_8: 4490812-4503456 Arabidopsis lyrata
AL8G17050 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 4493457-4503456 Arabidopsis lyrata
AL8G17050 10.0kb downstream 10.0kb downstream 12645   true scaffold_8: 4480812-4493456 Arabidopsis lyrata
AL8G17050 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 4480812-4490811 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379151 5261 Brassicaceae View MSA
123832560 5264 Brassicales-Malvales View MSA
124339900 5266 SBM View MSA
124244988 5268 Malvidae View MSA
124064013 5270 Rosid View MSA
123739138 5271 Pentapetalae View MSA
122789281 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain