Gene : AL8G12290 A. lyrata v2.1

Defline:  (1 of 1) K00819 - ornithine--oxo-acid transaminase (E2.6.1.13, rocD) Genomic Order:  213
Name:  ? AL8G12290 Secondary Identifier:  ? PAC:35949016

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ARGASEDEG-PWY Arabidopsis lyrata pathologic  
Alyrata ARGININE-SYN4-PWY Arabidopsis lyrata pathologic  
Alyrata ARG-PRO-PWY Arabidopsis lyrata pathologic  
Alyrata CITRULBIO-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-3341 Arabidopsis lyrata pathologic  
Alyrata PWY-6922 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G12290 0.5kb upstream 0.5kb upstream 3431   true scaffold_8: 1141306-1144736 Arabidopsis lyrata
AL8G12290 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 1141306-1141805 Arabidopsis lyrata
AL8G12290 0.5kb downstream 0.5kb downstream 3431   true scaffold_8: 1141806-1145236 Arabidopsis lyrata
AL8G12290 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 1144737-1145236 Arabidopsis lyrata
AL8G12290 1.0kb upstream 1.0kb upstream 3931   true scaffold_8: 1140806-1144736 Arabidopsis lyrata
AL8G12290 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 1140806-1141805 Arabidopsis lyrata
AL8G12290 1.0kb downstream 1.0kb downstream 3931   true scaffold_8: 1141806-1145736 Arabidopsis lyrata
AL8G12290 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 1144737-1145736 Arabidopsis lyrata
AL8G12290 2.0kb upstream 2.0kb upstream 4931   true scaffold_8: 1139806-1144736 Arabidopsis lyrata
AL8G12290 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 1139806-1141805 Arabidopsis lyrata
AL8G12290 2.0kb downstream 2.0kb downstream 4931   true scaffold_8: 1141806-1146736 Arabidopsis lyrata
AL8G12290 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 1144737-1146736 Arabidopsis lyrata
AL8G12290 5.0kb upstream 5.0kb upstream 7931   true scaffold_8: 1136806-1144736 Arabidopsis lyrata
AL8G12290 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 1136806-1141805 Arabidopsis lyrata
AL8G12290 5.0kb downstream 5.0kb downstream 7931   true scaffold_8: 1141806-1149736 Arabidopsis lyrata
AL8G12290 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 1144737-1149736 Arabidopsis lyrata
AL8G12290 10.0kb upstream 10.0kb upstream 12931   true scaffold_8: 1131806-1144736 Arabidopsis lyrata
AL8G12290 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 1131806-1141805 Arabidopsis lyrata
AL8G12290 10.0kb downstream 10.0kb downstream 12931   true scaffold_8: 1141806-1154736 Arabidopsis lyrata
AL8G12290 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 1144737-1154736 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360278 5261 Brassicaceae View MSA
123833136 5264 Brassicales-Malvales View MSA
124343213 5266 SBM View MSA
124237215 5268 Malvidae View MSA
124066510 5270 Rosid View MSA
123747705 5271 Pentapetalae View MSA
122789437 5272 Eudicot View MSA
122044834 5273 Angiosperm View MSA
121345718 5274 Embryophyte View MSA
123423939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain