Gene : AL8G29200 A. lyrata v2.1

Defline:  (1 of 1) 1.13.11.5 - Homogentisate 1,2-dioxygenase / Homogentisicase Genomic Order:  1695
Name:  ? AL8G29200 Secondary Identifier:  ? PAC:35948919

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TYRFUMCAT-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G29200 0.5kb upstream 0.5kb upstream 2897   true scaffold_8: 16243630-16246526 Arabidopsis lyrata
AL8G29200 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 16243630-16244129 Arabidopsis lyrata
AL8G29200 0.5kb downstream 0.5kb downstream 2897   true scaffold_8: 16244130-16247026 Arabidopsis lyrata
AL8G29200 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 16246527-16247026 Arabidopsis lyrata
AL8G29200 1.0kb upstream 1.0kb upstream 3397   true scaffold_8: 16243130-16246526 Arabidopsis lyrata
AL8G29200 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 16243130-16244129 Arabidopsis lyrata
AL8G29200 1.0kb downstream 1.0kb downstream 3397   true scaffold_8: 16244130-16247526 Arabidopsis lyrata
AL8G29200 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 16246527-16247526 Arabidopsis lyrata
AL8G29200 2.0kb upstream 2.0kb upstream 4397   true scaffold_8: 16242130-16246526 Arabidopsis lyrata
AL8G29200 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 16242130-16244129 Arabidopsis lyrata
AL8G29200 2.0kb downstream 2.0kb downstream 4397   true scaffold_8: 16244130-16248526 Arabidopsis lyrata
AL8G29200 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 16246527-16248526 Arabidopsis lyrata
AL8G29200 5.0kb upstream 5.0kb upstream 7397   true scaffold_8: 16239130-16246526 Arabidopsis lyrata
AL8G29200 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 16239130-16244129 Arabidopsis lyrata
AL8G29200 5.0kb downstream 5.0kb downstream 7397   true scaffold_8: 16244130-16251526 Arabidopsis lyrata
AL8G29200 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 16246527-16251526 Arabidopsis lyrata
AL8G29200 10.0kb upstream 10.0kb upstream 12397   true scaffold_8: 16234130-16246526 Arabidopsis lyrata
AL8G29200 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 16234130-16244129 Arabidopsis lyrata
AL8G29200 10.0kb downstream 10.0kb downstream 12397   true scaffold_8: 16244130-16256526 Arabidopsis lyrata
AL8G29200 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 16246527-16256526 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373163 5261 Brassicaceae View MSA
123829499 5264 Brassicales-Malvales View MSA
124338204 5266 SBM View MSA
124236984 5268 Malvidae View MSA
124064618 5270 Rosid View MSA
123740810 5271 Pentapetalae View MSA
122786399 5272 Eudicot View MSA
122042428 5273 Angiosperm View MSA
121346859 5274 Embryophyte View MSA
123424235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain