Gene : AL8G26980 A. lyrata v2.1

Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1484
Name:  ? AL8G26980 Secondary Identifier:  ? PAC:35949064

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRNA-CHARGING-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G26980 0.5kb upstream 0.5kb upstream 3671   true scaffold_8: 15179808-15183478 Arabidopsis lyrata
AL8G26980 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 15179808-15180307 Arabidopsis lyrata
AL8G26980 0.5kb downstream 0.5kb downstream 3671   true scaffold_8: 15180308-15183978 Arabidopsis lyrata
AL8G26980 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 15183479-15183978 Arabidopsis lyrata
AL8G26980 1.0kb upstream 1.0kb upstream 4171   true scaffold_8: 15179308-15183478 Arabidopsis lyrata
AL8G26980 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 15179308-15180307 Arabidopsis lyrata
AL8G26980 1.0kb downstream 1.0kb downstream 4171   true scaffold_8: 15180308-15184478 Arabidopsis lyrata
AL8G26980 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 15183479-15184478 Arabidopsis lyrata
AL8G26980 2.0kb upstream 2.0kb upstream 5171   true scaffold_8: 15178308-15183478 Arabidopsis lyrata
AL8G26980 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 15178308-15180307 Arabidopsis lyrata
AL8G26980 2.0kb downstream 2.0kb downstream 5171   true scaffold_8: 15180308-15185478 Arabidopsis lyrata
AL8G26980 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 15183479-15185478 Arabidopsis lyrata
AL8G26980 5.0kb upstream 5.0kb upstream 8171   true scaffold_8: 15175308-15183478 Arabidopsis lyrata
AL8G26980 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 15175308-15180307 Arabidopsis lyrata
AL8G26980 5.0kb downstream 5.0kb downstream 8171   true scaffold_8: 15180308-15188478 Arabidopsis lyrata
AL8G26980 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 15183479-15188478 Arabidopsis lyrata
AL8G26980 10.0kb upstream 10.0kb upstream 13171   true scaffold_8: 15170308-15183478 Arabidopsis lyrata
AL8G26980 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 15170308-15180307 Arabidopsis lyrata
AL8G26980 10.0kb downstream 10.0kb downstream 13171   true scaffold_8: 15180308-15193478 Arabidopsis lyrata
AL8G26980 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 15183479-15193478 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367918 5261 Brassicaceae View MSA
123834383 5264 Brassicales-Malvales View MSA
124344312 5266 SBM View MSA
124238482 5268 Malvidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain