Gene : AL8G27770 A. lyrata v2.1

Defline:  (1 of 1) 2.5.1.16//2.5.1.22 - Spermidine synthase / Putrescine aminopropyltransferase // Spermine synthase / Spermidine aminopropyltransferase Genomic Order:  1560
Name:  ? AL8G27770 Secondary Identifier:  ? PAC:35950780

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ARGSPECAT-PWY Arabidopsis lyrata pathologic  
Alyrata BSUBPOLYAMSYN-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-7528 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G27770 0.5kb upstream 0.5kb upstream 3714   true scaffold_8: 15506396-15510109 Arabidopsis lyrata
AL8G27770 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 15506396-15506895 Arabidopsis lyrata
AL8G27770 0.5kb downstream 0.5kb downstream 3714   true scaffold_8: 15506896-15510609 Arabidopsis lyrata
AL8G27770 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 15510110-15510609 Arabidopsis lyrata
AL8G27770 1.0kb upstream 1.0kb upstream 4214   true scaffold_8: 15505896-15510109 Arabidopsis lyrata
AL8G27770 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 15505896-15506895 Arabidopsis lyrata
AL8G27770 1.0kb downstream 1.0kb downstream 4214   true scaffold_8: 15506896-15511109 Arabidopsis lyrata
AL8G27770 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 15510110-15511109 Arabidopsis lyrata
AL8G27770 2.0kb upstream 2.0kb upstream 5214   true scaffold_8: 15504896-15510109 Arabidopsis lyrata
AL8G27770 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 15504896-15506895 Arabidopsis lyrata
AL8G27770 2.0kb downstream 2.0kb downstream 5214   true scaffold_8: 15506896-15512109 Arabidopsis lyrata
AL8G27770 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 15510110-15512109 Arabidopsis lyrata
AL8G27770 5.0kb upstream 5.0kb upstream 8214   true scaffold_8: 15501896-15510109 Arabidopsis lyrata
AL8G27770 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 15501896-15506895 Arabidopsis lyrata
AL8G27770 5.0kb downstream 5.0kb downstream 8214   true scaffold_8: 15506896-15515109 Arabidopsis lyrata
AL8G27770 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 15510110-15515109 Arabidopsis lyrata
AL8G27770 10.0kb upstream 10.0kb upstream 13214   true scaffold_8: 15496896-15510109 Arabidopsis lyrata
AL8G27770 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 15496896-15506895 Arabidopsis lyrata
AL8G27770 10.0kb downstream 10.0kb downstream 13214   true scaffold_8: 15506896-15520109 Arabidopsis lyrata
AL8G27770 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 15510110-15520109 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374357 5261 Brassicaceae View MSA
123829244 5264 Brassicales-Malvales View MSA
124341220 5266 SBM View MSA
124251479 5268 Malvidae View MSA
124062886 5270 Rosid View MSA
123739892 5271 Pentapetalae View MSA
122785821 5272 Eudicot View MSA
122045666 5273 Angiosperm View MSA
121310481 5274 Embryophyte View MSA
123347953 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain