Gene : AL8G25350 A. lyrata v2.1

Defline:  (1 of 2) PTHR11404:SF24 - SUPEROXIDE DISMUTASE [FE] 2, CHLOROPLASTIC Genomic Order:  1334
Name:  ? AL8G25350 Secondary Identifier:  ? PAC:35948967

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata DETOX1-PWY Arabidopsis lyrata pathologic  
Alyrata DETOX1-PWY-1 Arabidopsis lyrata pathologic  
Alyrata PWY-6854 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G25350 0.5kb upstream 0.5kb upstream 2981   true scaffold_8: 14349855-14352835 Arabidopsis lyrata
AL8G25350 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 14352336-14352835 Arabidopsis lyrata
AL8G25350 0.5kb downstream 0.5kb downstream 2981   true scaffold_8: 14349355-14352335 Arabidopsis lyrata
AL8G25350 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 14349355-14349854 Arabidopsis lyrata
AL8G25350 1.0kb upstream 1.0kb upstream 3481   true scaffold_8: 14349855-14353335 Arabidopsis lyrata
AL8G25350 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 14352336-14353335 Arabidopsis lyrata
AL8G25350 1.0kb downstream 1.0kb downstream 3481   true scaffold_8: 14348855-14352335 Arabidopsis lyrata
AL8G25350 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 14348855-14349854 Arabidopsis lyrata
AL8G25350 2.0kb upstream 2.0kb upstream 4481   true scaffold_8: 14349855-14354335 Arabidopsis lyrata
AL8G25350 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 14352336-14354335 Arabidopsis lyrata
AL8G25350 2.0kb downstream 2.0kb downstream 4481   true scaffold_8: 14347855-14352335 Arabidopsis lyrata
AL8G25350 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 14347855-14349854 Arabidopsis lyrata
AL8G25350 5.0kb upstream 5.0kb upstream 7481   true scaffold_8: 14349855-14357335 Arabidopsis lyrata
AL8G25350 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 14352336-14357335 Arabidopsis lyrata
AL8G25350 5.0kb downstream 5.0kb downstream 7481   true scaffold_8: 14344855-14352335 Arabidopsis lyrata
AL8G25350 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 14344855-14349854 Arabidopsis lyrata
AL8G25350 10.0kb upstream 10.0kb upstream 12481   true scaffold_8: 14349855-14362335 Arabidopsis lyrata
AL8G25350 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 14352336-14362335 Arabidopsis lyrata
AL8G25350 10.0kb downstream 10.0kb downstream 12481   true scaffold_8: 14339855-14352335 Arabidopsis lyrata
AL8G25350 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 14339855-14349854 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370547 5261 Brassicaceae View MSA
123830652 5264 Brassicales-Malvales View MSA
124342635 5266 SBM View MSA
124246967 5268 Malvidae View MSA
124072391 5270 Rosid View MSA
123741409 5271 Pentapetalae View MSA
122787652 5272 Eudicot View MSA
122047747 5273 Angiosperm View MSA
121351401 5274 Embryophyte View MSA
123425969 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain