Gene : AL9U10130 A. lyrata v2.1

Defline:  (1 of 1) K01703 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit (leuC) Genomic Order:  11
Name:  ? AL9U10130 Secondary Identifier:  ? PAC:35925580

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata BRANCHED-CHAIN-AA-SYN-PWY Arabidopsis lyrata pathologic  
Alyrata LEUSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL9U10130 0.5kb upstream 0.5kb upstream 4785   true scaffold_9: 206298-211082 Arabidopsis lyrata
AL9U10130 0.5kb upstream 0.5kb upstream 500   false scaffold_9: 206298-206797 Arabidopsis lyrata
AL9U10130 0.5kb downstream 0.5kb downstream 4785   true scaffold_9: 206798-211582 Arabidopsis lyrata
AL9U10130 0.5kb downstream 0.5kb downstream 500   false scaffold_9: 211083-211582 Arabidopsis lyrata
AL9U10130 1.0kb upstream 1.0kb upstream 5285   true scaffold_9: 205798-211082 Arabidopsis lyrata
AL9U10130 1.0kb upstream 1.0kb upstream 1000   false scaffold_9: 205798-206797 Arabidopsis lyrata
AL9U10130 1.0kb downstream 1.0kb downstream 5285   true scaffold_9: 206798-212082 Arabidopsis lyrata
AL9U10130 1.0kb downstream 1.0kb downstream 1000   false scaffold_9: 211083-212082 Arabidopsis lyrata
AL9U10130 2.0kb upstream 2.0kb upstream 6285   true scaffold_9: 204798-211082 Arabidopsis lyrata
AL9U10130 2.0kb upstream 2.0kb upstream 2000   false scaffold_9: 204798-206797 Arabidopsis lyrata
AL9U10130 2.0kb downstream 2.0kb downstream 6285   true scaffold_9: 206798-213082 Arabidopsis lyrata
AL9U10130 2.0kb downstream 2.0kb downstream 2000   false scaffold_9: 211083-213082 Arabidopsis lyrata
AL9U10130 5.0kb upstream 5.0kb upstream 9285   true scaffold_9: 201798-211082 Arabidopsis lyrata
AL9U10130 5.0kb upstream 5.0kb upstream 5000   false scaffold_9: 201798-206797 Arabidopsis lyrata
AL9U10130 5.0kb downstream 5.0kb downstream 9285   true scaffold_9: 206798-216082 Arabidopsis lyrata
AL9U10130 5.0kb downstream 5.0kb downstream 5000   false scaffold_9: 211083-216082 Arabidopsis lyrata
AL9U10130 10.0kb upstream 10.0kb upstream 14285   true scaffold_9: 196798-211082 Arabidopsis lyrata
AL9U10130 10.0kb upstream 10.0kb upstream 10000   false scaffold_9: 196798-206797 Arabidopsis lyrata
AL9U10130 10.0kb downstream 10.0kb downstream 14285   true scaffold_9: 206798-221082 Arabidopsis lyrata
AL9U10130 10.0kb downstream 10.0kb downstream 10000   false scaffold_9: 211083-221082 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376626 5261 Brassicaceae View MSA
123838353 5264 Brassicales-Malvales View MSA
124346473 5266 SBM View MSA
124238803 5268 Malvidae View MSA
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain