Gene : AL8G36840 A. lyrata v2.1

Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  2414
Name:  ? AL8G36840 Secondary Identifier:  ? PAC:35949072

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6689 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G36840 0.5kb upstream 0.5kb upstream 2145   true scaffold_8: 19473672-19475816 Arabidopsis lyrata
AL8G36840 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 19475317-19475816 Arabidopsis lyrata
AL8G36840 0.5kb downstream 0.5kb downstream 2145   true scaffold_8: 19473172-19475316 Arabidopsis lyrata
AL8G36840 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 19473172-19473671 Arabidopsis lyrata
AL8G36840 1.0kb upstream 1.0kb upstream 2645   true scaffold_8: 19473672-19476316 Arabidopsis lyrata
AL8G36840 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 19475317-19476316 Arabidopsis lyrata
AL8G36840 1.0kb downstream 1.0kb downstream 2645   true scaffold_8: 19472672-19475316 Arabidopsis lyrata
AL8G36840 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 19472672-19473671 Arabidopsis lyrata
AL8G36840 2.0kb upstream 2.0kb upstream 3645   true scaffold_8: 19473672-19477316 Arabidopsis lyrata
AL8G36840 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 19475317-19477316 Arabidopsis lyrata
AL8G36840 2.0kb downstream 2.0kb downstream 3645   true scaffold_8: 19471672-19475316 Arabidopsis lyrata
AL8G36840 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 19471672-19473671 Arabidopsis lyrata
AL8G36840 5.0kb upstream 5.0kb upstream 6645   true scaffold_8: 19473672-19480316 Arabidopsis lyrata
AL8G36840 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 19475317-19480316 Arabidopsis lyrata
AL8G36840 5.0kb downstream 5.0kb downstream 6645   true scaffold_8: 19468672-19475316 Arabidopsis lyrata
AL8G36840 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 19468672-19473671 Arabidopsis lyrata
AL8G36840 10.0kb upstream 10.0kb upstream 11645   true scaffold_8: 19473672-19485316 Arabidopsis lyrata
AL8G36840 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 19475317-19485316 Arabidopsis lyrata
AL8G36840 10.0kb downstream 10.0kb downstream 11645   true scaffold_8: 19463672-19475316 Arabidopsis lyrata
AL8G36840 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 19463672-19473671 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122373562 5261 Brassicaceae View MSA
123840604 5264 Brassicales-Malvales View MSA
124346911 5266 SBM View MSA
124240586 5268 Malvidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain