Gene : AL1G15440 A. lyrata v2.1

Defline:  (1 of 4) PTHR12741:SF9 - CALLOSE SYNTHASE 1-RELATED Genomic Order:  524
Name:  ? AL1G15440 Secondary Identifier:  ? PAC:35931054

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6773 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G15440 0.5kb upstream 0.5kb upstream 11852   true scaffold_1: 1978172-1990023 Arabidopsis lyrata
AL1G15440 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 1989524-1990023 Arabidopsis lyrata
AL1G15440 0.5kb downstream 0.5kb downstream 11852   true scaffold_1: 1977672-1989523 Arabidopsis lyrata
AL1G15440 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 1977672-1978171 Arabidopsis lyrata
AL1G15440 1.0kb upstream 1.0kb upstream 12352   true scaffold_1: 1978172-1990523 Arabidopsis lyrata
AL1G15440 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 1989524-1990523 Arabidopsis lyrata
AL1G15440 1.0kb downstream 1.0kb downstream 12352   true scaffold_1: 1977172-1989523 Arabidopsis lyrata
AL1G15440 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 1977172-1978171 Arabidopsis lyrata
AL1G15440 2.0kb upstream 2.0kb upstream 13352   true scaffold_1: 1978172-1991523 Arabidopsis lyrata
AL1G15440 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 1989524-1991523 Arabidopsis lyrata
AL1G15440 2.0kb downstream 2.0kb downstream 13352   true scaffold_1: 1976172-1989523 Arabidopsis lyrata
AL1G15440 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 1976172-1978171 Arabidopsis lyrata
AL1G15440 5.0kb upstream 5.0kb upstream 16352   true scaffold_1: 1978172-1994523 Arabidopsis lyrata
AL1G15440 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 1989524-1994523 Arabidopsis lyrata
AL1G15440 5.0kb downstream 5.0kb downstream 16352   true scaffold_1: 1973172-1989523 Arabidopsis lyrata
AL1G15440 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 1973172-1978171 Arabidopsis lyrata
AL1G15440 10.0kb upstream 10.0kb upstream 21352   true scaffold_1: 1978172-1999523 Arabidopsis lyrata
AL1G15440 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 1989524-1999523 Arabidopsis lyrata
AL1G15440 10.0kb downstream 10.0kb downstream 21352   true scaffold_1: 1968172-1989523 Arabidopsis lyrata
AL1G15440 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 1968172-1978171 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364153 5261 Brassicaceae View MSA
123798695 5264 Brassicales-Malvales View MSA
124346959 5266 SBM View MSA
124251802 5268 Malvidae View MSA
124072639 5270 Rosid View MSA
123745171 5271 Pentapetalae View MSA
122788947 5272 Eudicot View MSA
122050431 5273 Angiosperm View MSA
121349066 5274 Embryophyte View MSA
123428420 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain