Gene : AL1G12300 A. lyrata v2.1

Defline:  (1 of 1) K00949 - thiamine pyrophosphokinase (thiN, TPK1, THI80) Genomic Order:  218
Name:  ? AL1G12300 Secondary Identifier:  ? PAC:35933547

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6908 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G12300 0.5kb upstream 0.5kb upstream 2275   true scaffold_1: 784310-786584 Arabidopsis lyrata
AL1G12300 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 786085-786584 Arabidopsis lyrata
AL1G12300 0.5kb downstream 0.5kb downstream 2275   true scaffold_1: 783810-786084 Arabidopsis lyrata
AL1G12300 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 783810-784309 Arabidopsis lyrata
AL1G12300 1.0kb upstream 1.0kb upstream 2775   true scaffold_1: 784310-787084 Arabidopsis lyrata
AL1G12300 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 786085-787084 Arabidopsis lyrata
AL1G12300 1.0kb downstream 1.0kb downstream 2775   true scaffold_1: 783310-786084 Arabidopsis lyrata
AL1G12300 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 783310-784309 Arabidopsis lyrata
AL1G12300 2.0kb upstream 2.0kb upstream 3775   true scaffold_1: 784310-788084 Arabidopsis lyrata
AL1G12300 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 786085-788084 Arabidopsis lyrata
AL1G12300 2.0kb downstream 2.0kb downstream 3775   true scaffold_1: 782310-786084 Arabidopsis lyrata
AL1G12300 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 782310-784309 Arabidopsis lyrata
AL1G12300 5.0kb upstream 5.0kb upstream 6775   true scaffold_1: 784310-791084 Arabidopsis lyrata
AL1G12300 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 786085-791084 Arabidopsis lyrata
AL1G12300 5.0kb downstream 5.0kb downstream 6775   true scaffold_1: 779310-786084 Arabidopsis lyrata
AL1G12300 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 779310-784309 Arabidopsis lyrata
AL1G12300 10.0kb upstream 10.0kb upstream 11775   true scaffold_1: 784310-796084 Arabidopsis lyrata
AL1G12300 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 786085-796084 Arabidopsis lyrata
AL1G12300 10.0kb downstream 10.0kb downstream 11775   true scaffold_1: 774310-786084 Arabidopsis lyrata
AL1G12300 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 774310-784309 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378270 5261 Brassicaceae View MSA
123837799 5264 Brassicales-Malvales View MSA
124337669 5266 SBM View MSA
124238319 5268 Malvidae View MSA
124064421 5270 Rosid View MSA
123740086 5271 Pentapetalae View MSA
122769969 5272 Eudicot View MSA
122046316 5273 Angiosperm View MSA
121345006 5274 Embryophyte View MSA
123424730 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain