Gene : AL1G11430 A. lyrata v2.1

Defline:  (1 of 1) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  137
Name:  ? AL1G11430 Secondary Identifier:  ? PAC:35931761

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5173 Arabidopsis lyrata pathologic  
Alyrata PWY-5464 Arabidopsis lyrata pathologic  
Alyrata PYRUVDEHYD-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G11430 0.5kb upstream 0.5kb upstream 2440   true scaffold_1: 484770-487209 Arabidopsis lyrata
AL1G11430 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 484770-485269 Arabidopsis lyrata
AL1G11430 0.5kb downstream 0.5kb downstream 2440   true scaffold_1: 485270-487709 Arabidopsis lyrata
AL1G11430 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 487210-487709 Arabidopsis lyrata
AL1G11430 1.0kb upstream 1.0kb upstream 2940   true scaffold_1: 484270-487209 Arabidopsis lyrata
AL1G11430 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 484270-485269 Arabidopsis lyrata
AL1G11430 1.0kb downstream 1.0kb downstream 2940   true scaffold_1: 485270-488209 Arabidopsis lyrata
AL1G11430 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 487210-488209 Arabidopsis lyrata
AL1G11430 2.0kb upstream 2.0kb upstream 3940   true scaffold_1: 483270-487209 Arabidopsis lyrata
AL1G11430 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 483270-485269 Arabidopsis lyrata
AL1G11430 2.0kb downstream 2.0kb downstream 3940   true scaffold_1: 485270-489209 Arabidopsis lyrata
AL1G11430 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 487210-489209 Arabidopsis lyrata
AL1G11430 5.0kb upstream 5.0kb upstream 6940   true scaffold_1: 480270-487209 Arabidopsis lyrata
AL1G11430 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 480270-485269 Arabidopsis lyrata
AL1G11430 5.0kb downstream 5.0kb downstream 6940   true scaffold_1: 485270-492209 Arabidopsis lyrata
AL1G11430 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 487210-492209 Arabidopsis lyrata
AL1G11430 10.0kb upstream 10.0kb upstream 11940   true scaffold_1: 475270-487209 Arabidopsis lyrata
AL1G11430 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 475270-485269 Arabidopsis lyrata
AL1G11430 10.0kb downstream 10.0kb downstream 11940   true scaffold_1: 485270-497209 Arabidopsis lyrata
AL1G11430 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 487210-497209 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375294 5261 Brassicaceae View MSA
123835447 5264 Brassicales-Malvales View MSA
124343284 5266 SBM View MSA
124241416 5268 Malvidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain