Gene : AL1G29680 A. lyrata v2.1

Defline:  (1 of 4) 1.13.11.12 - Linoleate 13S-lipoxygenase / Lipoxidase Genomic Order:  1878
Name:  ? AL1G29680 Secondary Identifier:  ? PAC:35934435

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5409 Arabidopsis lyrata pathologic  
Alyrata PWY-5410 Arabidopsis lyrata pathologic  
Alyrata PWY-735 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G29680 0.5kb upstream 0.5kb upstream 4537   true scaffold_1: 7300751-7305287 Arabidopsis lyrata
AL1G29680 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 7300751-7301250 Arabidopsis lyrata
AL1G29680 0.5kb downstream 0.5kb downstream 4537   true scaffold_1: 7301251-7305787 Arabidopsis lyrata
AL1G29680 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 7305288-7305787 Arabidopsis lyrata
AL1G29680 1.0kb upstream 1.0kb upstream 5037   true scaffold_1: 7300251-7305287 Arabidopsis lyrata
AL1G29680 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 7300251-7301250 Arabidopsis lyrata
AL1G29680 1.0kb downstream 1.0kb downstream 5037   true scaffold_1: 7301251-7306287 Arabidopsis lyrata
AL1G29680 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 7305288-7306287 Arabidopsis lyrata
AL1G29680 2.0kb upstream 2.0kb upstream 6037   true scaffold_1: 7299251-7305287 Arabidopsis lyrata
AL1G29680 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 7299251-7301250 Arabidopsis lyrata
AL1G29680 2.0kb downstream 2.0kb downstream 6037   true scaffold_1: 7301251-7307287 Arabidopsis lyrata
AL1G29680 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 7305288-7307287 Arabidopsis lyrata
AL1G29680 5.0kb upstream 5.0kb upstream 9037   true scaffold_1: 7296251-7305287 Arabidopsis lyrata
AL1G29680 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 7296251-7301250 Arabidopsis lyrata
AL1G29680 5.0kb downstream 5.0kb downstream 9037   true scaffold_1: 7301251-7310287 Arabidopsis lyrata
AL1G29680 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 7305288-7310287 Arabidopsis lyrata
AL1G29680 10.0kb upstream 10.0kb upstream 14037   true scaffold_1: 7291251-7305287 Arabidopsis lyrata
AL1G29680 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 7291251-7301250 Arabidopsis lyrata
AL1G29680 10.0kb downstream 10.0kb downstream 14037   true scaffold_1: 7301251-7315287 Arabidopsis lyrata
AL1G29680 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 7305288-7315287 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372278 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain