Gene : AL1G29550 A. lyrata v2.1

Defline:  (1 of 2) K00814 - alanine transaminase (GPT, ALT) Genomic Order:  1865
Name:  ? AL1G29550 Secondary Identifier:  ? PAC:35932663

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata ALANINE-DEG3-PWY Arabidopsis lyrata pathologic  
Alyrata ALANINE-SYN2-PWY Arabidopsis lyrata pathologic  
Alyrata PWY-7115 Arabidopsis lyrata pathologic  
Alyrata PWY-7117 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G29550 0.5kb upstream 0.5kb upstream 4276   true scaffold_1: 7240290-7244565 Arabidopsis lyrata
AL1G29550 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 7240290-7240789 Arabidopsis lyrata
AL1G29550 0.5kb downstream 0.5kb downstream 4276   true scaffold_1: 7240790-7245065 Arabidopsis lyrata
AL1G29550 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 7244566-7245065 Arabidopsis lyrata
AL1G29550 1.0kb upstream 1.0kb upstream 4776   true scaffold_1: 7239790-7244565 Arabidopsis lyrata
AL1G29550 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 7239790-7240789 Arabidopsis lyrata
AL1G29550 1.0kb downstream 1.0kb downstream 4776   true scaffold_1: 7240790-7245565 Arabidopsis lyrata
AL1G29550 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 7244566-7245565 Arabidopsis lyrata
AL1G29550 2.0kb upstream 2.0kb upstream 5776   true scaffold_1: 7238790-7244565 Arabidopsis lyrata
AL1G29550 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 7238790-7240789 Arabidopsis lyrata
AL1G29550 2.0kb downstream 2.0kb downstream 5776   true scaffold_1: 7240790-7246565 Arabidopsis lyrata
AL1G29550 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 7244566-7246565 Arabidopsis lyrata
AL1G29550 5.0kb upstream 5.0kb upstream 8776   true scaffold_1: 7235790-7244565 Arabidopsis lyrata
AL1G29550 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 7235790-7240789 Arabidopsis lyrata
AL1G29550 5.0kb downstream 5.0kb downstream 8776   true scaffold_1: 7240790-7249565 Arabidopsis lyrata
AL1G29550 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 7244566-7249565 Arabidopsis lyrata
AL1G29550 10.0kb upstream 10.0kb upstream 13776   true scaffold_1: 7230790-7244565 Arabidopsis lyrata
AL1G29550 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 7230790-7240789 Arabidopsis lyrata
AL1G29550 10.0kb downstream 10.0kb downstream 13776   true scaffold_1: 7240790-7254565 Arabidopsis lyrata
AL1G29550 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 7244566-7254565 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366358 5261 Brassicaceae View MSA
123836852 5264 Brassicales-Malvales View MSA
124344699 5266 SBM View MSA
124251764 5268 Malvidae View MSA
124064256 5270 Rosid View MSA
123749170 5271 Pentapetalae View MSA
122793882 5272 Eudicot View MSA
122043472 5273 Angiosperm View MSA
121347513 5274 Embryophyte View MSA
123427750 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain