Protein Domain : IPR015031

Type:  Domain Name:  Capsid protein VP4, Picornavirus
Description:  This entry represents the VP4 coat protein found in Picornaviruses, small RNA-containing mammalian viruses such as Foot-and-mouth disease virus(FMDV) [], Mengo encephalomyocarditis virus[] and Theiler's murine encephalomyelitis virus(strain DA) (TMEV) []. The viral capsid of Picornaviruses is composed of 60 icosahedral copies of four capsid proteins, VP1, VP2, VP3 and VP4, enclosing the viral positive-strand RNA genome. VP4 lies on the inner surface of the protein shell formed by the major capsid proteins, VP1, VP2 and VP3. The three major capsid proteins have a conserved beta-barrel fold, while VP4 has little regular secondary structure. The organisation of the three major capsid proteins leads to surface depressions, or pits, thought to be involved in receptor binding, while the variable outer rim is involved in antibody recognition. The small VP4 is thought to be involved in the initial disassembly and final assembly stages []. Short Name:  Capsid_VP4_Picornavir

0 Child Features

0 Contains

2 Cross Referencess

Identifier
PF08935
G3DSA:4.10.90.10

0 Found In

1 GO Annotation

GO Term Gene Name
GO:0019030 IPR015031

1 Ontology Annotations

GO Term Gene Name
GO:0019030 IPR015031

0 Parent Features

212 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
evm.model.supercontig_66.65 PAC:16424631 Carica papaya 86  
29929.m004771 B9RMR6 PAC:16814010 Ricinus communis 499  
orange1.1g021422m A0A067G001 PAC:18097199 Citrus sinensis 312  
AT1G24490.2 F4I9A9 PAC:19649510 Arabidopsis thaliana 462  
AT1G29179.1 Q2V4K2 PAC:19657370 Arabidopsis thaliana 238  
AT1G24490.1 Q9FYL3 PAC:19649509 Arabidopsis thaliana 499  
Ciclev10010062m V4UN23 PAC:20794882 Citrus clementina 83  
Potri.011G116200.3 PAC:27000829 Populus trichocarpa 192  
Potri.011G116200.5 A0A2K1YIU0 PAC:27000828 Populus trichocarpa 213  
Potri.011G116200.1 B9HZS0 PAC:27000827 Populus trichocarpa 229  
Potri.011G116200.4 B9HZS0 PAC:27000826 Populus trichocarpa 229  
Potri.011G116200.2 PAC:27000830 Populus trichocarpa 192  
Gorai.001G197500.1 A0A0D2Q131 PAC:26823185 Gossypium raimondii 328  
Gorai.001G197500.3 A0A0D2QSQ1 PAC:26823186 Gossypium raimondii 319  
Gorai.001G197500.4 A0A0D2PTR7 PAC:26823187 Gossypium raimondii 314  
Gorai.001G197500.2 A0A0D2Q131 PAC:26823184 Gossypium raimondii 328  
Gorai.008G162600.1 A0A0D2T739 PAC:26817093 Gossypium raimondii 533  
Gorai.008G162600.3 A0A0D2T739 PAC:26817092 Gossypium raimondii 533  
Gorai.008G162600.2 A0A0D2T739 PAC:26817091 Gossypium raimondii 533  
Glyma.11G245300.1.p I1LNE2 PAC:30531623 Glycine max 543  
Brara.G02903.1.p A0A397YQG7 PAC:30631999 Brassica rapa FPsc 392  
Brara.I03042.1.p A0A397Y0S9 PAC:30645103 Brassica rapa FPsc 490  
Cre12.g492503.t1.1 A0A2K3D1Y3 PAC:30793422 Chlamydomonas reinhardtii 184  
Medtr4g130190.3 G7JED6 PAC:31108553 Medicago truncatula 372  
Medtr4g130190.1 G7JFG8 PAC:31108557 Medicago truncatula 314  
Medtr4g130190.2 G7JFG8 PAC:31108556 Medicago truncatula 314  
Medtr8g014620.1 G7LGQ2 PAC:31070370 Medicago truncatula 104  
Pp3c3_22200V3.6.p PAC:32943767 Physcomitrium patens 438  
Pp3c3_22200V3.7.p PAC:32943768 Physcomitrium patens 438  
Pp3c3_22200V3.8.p PAC:32943769 Physcomitrium patens 438  

3 Publications

First Author Title Year Journal Volume Pages PubMed ID
            9927414
            1549565
            2156078