Gene : Tp57577_TGAC_v2_gene34978 T. pratense v2
Defline:  (1 of 6) PTHR12894:SF10 - VAM6/VPS39-LIKE PROTEIN Genomic Order:  583
Name:  ? Tp57577_TGAC_v2_gene34978 Secondary Identifier:  ? PAC:35964711
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene34978 0.5kb upstream 0.5kb upstream 9227 true Tp57577_TGAC_v2_LG4: 5133155-5142381 Trifolium pratense
Tp57577_TGAC_v2_gene34978 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG4: 5141882-5142381 Trifolium pratense
Tp57577_TGAC_v2_gene34978 0.5kb downstream 0.5kb downstream 9227 true Tp57577_TGAC_v2_LG4: 5132655-5141881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG4: 5132655-5133154 Trifolium pratense
Tp57577_TGAC_v2_gene34978 1.0kb upstream 1.0kb upstream 9727 true Tp57577_TGAC_v2_LG4: 5133155-5142881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG4: 5141882-5142881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 1.0kb downstream 1.0kb downstream 9727 true Tp57577_TGAC_v2_LG4: 5132155-5141881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG4: 5132155-5133154 Trifolium pratense
Tp57577_TGAC_v2_gene34978 2.0kb upstream 2.0kb upstream 10727 true Tp57577_TGAC_v2_LG4: 5133155-5143881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG4: 5141882-5143881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 2.0kb downstream 2.0kb downstream 10727 true Tp57577_TGAC_v2_LG4: 5131155-5141881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG4: 5131155-5133154 Trifolium pratense
Tp57577_TGAC_v2_gene34978 5.0kb upstream 5.0kb upstream 13727 true Tp57577_TGAC_v2_LG4: 5133155-5146881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG4: 5141882-5146881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 5.0kb downstream 5.0kb downstream 13727 true Tp57577_TGAC_v2_LG4: 5128155-5141881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG4: 5128155-5133154 Trifolium pratense
Tp57577_TGAC_v2_gene34978 10.0kb upstream 10.0kb upstream 18727 true Tp57577_TGAC_v2_LG4: 5133155-5151881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG4: 5141882-5151881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 10.0kb downstream 10.0kb downstream 18727 true Tp57577_TGAC_v2_LG4: 5123155-5141881 Trifolium pratense
Tp57577_TGAC_v2_gene34978 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG4: 5123155-5133154 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302080 5265 Fabidae View MSA
124065437 5270 Rosid View MSA
123737407 5271 Pentapetalae View MSA
122791369 5272 Eudicot View MSA
122042923 5273 Angiosperm View MSA
121345932 5274 Embryophyte View MSA
123428312 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain