Gene : Tp57577_TGAC_v2_gene13562 T. pratense v2
Defline:  (1 of 3) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  1470
Name:  ? Tp57577_TGAC_v2_gene13562 Secondary Identifier:  ? PAC:35984343
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense GLYOXYLATE-BYPASS Trifolium pratense pathologic  
Tpratense PWY-5464 Trifolium pratense pathologic  
Tpratense PWY-561 Trifolium pratense pathologic  
Tpratense PWY-5690 Trifolium pratense pathologic  
Tpratense PWY-6549 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene13562 0.5kb upstream 0.5kb upstream 6371 true Tp57577_TGAC_v2_LG5: 14261694-14268064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 14261694-14262193 Trifolium pratense
Tp57577_TGAC_v2_gene13562 0.5kb downstream 0.5kb downstream 6371 true Tp57577_TGAC_v2_LG5: 14262194-14268564 Trifolium pratense
Tp57577_TGAC_v2_gene13562 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 14268065-14268564 Trifolium pratense
Tp57577_TGAC_v2_gene13562 1.0kb upstream 1.0kb upstream 6871 true Tp57577_TGAC_v2_LG5: 14261194-14268064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 14261194-14262193 Trifolium pratense
Tp57577_TGAC_v2_gene13562 1.0kb downstream 1.0kb downstream 6871 true Tp57577_TGAC_v2_LG5: 14262194-14269064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 14268065-14269064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 2.0kb upstream 2.0kb upstream 7871 true Tp57577_TGAC_v2_LG5: 14260194-14268064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 14260194-14262193 Trifolium pratense
Tp57577_TGAC_v2_gene13562 2.0kb downstream 2.0kb downstream 7871 true Tp57577_TGAC_v2_LG5: 14262194-14270064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 14268065-14270064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 5.0kb upstream 5.0kb upstream 10871 true Tp57577_TGAC_v2_LG5: 14257194-14268064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 14257194-14262193 Trifolium pratense
Tp57577_TGAC_v2_gene13562 5.0kb downstream 5.0kb downstream 10871 true Tp57577_TGAC_v2_LG5: 14262194-14273064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 14268065-14273064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 10.0kb upstream 10.0kb upstream 15871 true Tp57577_TGAC_v2_LG5: 14252194-14268064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 14252194-14262193 Trifolium pratense
Tp57577_TGAC_v2_gene13562 10.0kb downstream 10.0kb downstream 15871 true Tp57577_TGAC_v2_LG5: 14262194-14278064 Trifolium pratense
Tp57577_TGAC_v2_gene13562 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 14268065-14278064 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309645 5265 Fabidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain