Gene : Tp57577_TGAC_v2_gene2045 T. pratense v2
Defline:  (1 of 1) PTHR22594:SF36 - ASPARAGINE--TRNA LIGASE, CYTOPLASMIC 2 Genomic Order:  360
Name:  ? Tp57577_TGAC_v2_gene2045 Secondary Identifier:  ? PAC:35984439
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene2045 0.5kb upstream 0.5kb upstream 4414 true Tp57577_TGAC_v2_LG5: 3765257-3769670 Trifolium pratense
Tp57577_TGAC_v2_gene2045 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 3769171-3769670 Trifolium pratense
Tp57577_TGAC_v2_gene2045 0.5kb downstream 0.5kb downstream 4414 true Tp57577_TGAC_v2_LG5: 3764757-3769170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 3764757-3765256 Trifolium pratense
Tp57577_TGAC_v2_gene2045 1.0kb upstream 1.0kb upstream 4914 true Tp57577_TGAC_v2_LG5: 3765257-3770170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 3769171-3770170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 1.0kb downstream 1.0kb downstream 4914 true Tp57577_TGAC_v2_LG5: 3764257-3769170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 3764257-3765256 Trifolium pratense
Tp57577_TGAC_v2_gene2045 2.0kb upstream 2.0kb upstream 5914 true Tp57577_TGAC_v2_LG5: 3765257-3771170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 3769171-3771170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 2.0kb downstream 2.0kb downstream 5914 true Tp57577_TGAC_v2_LG5: 3763257-3769170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 3763257-3765256 Trifolium pratense
Tp57577_TGAC_v2_gene2045 5.0kb upstream 5.0kb upstream 8914 true Tp57577_TGAC_v2_LG5: 3765257-3774170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 3769171-3774170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 5.0kb downstream 5.0kb downstream 8914 true Tp57577_TGAC_v2_LG5: 3760257-3769170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 3760257-3765256 Trifolium pratense
Tp57577_TGAC_v2_gene2045 10.0kb upstream 10.0kb upstream 13914 true Tp57577_TGAC_v2_LG5: 3765257-3779170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 3769171-3779170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 10.0kb downstream 10.0kb downstream 13914 true Tp57577_TGAC_v2_LG5: 3755257-3769170 Trifolium pratense
Tp57577_TGAC_v2_gene2045 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 3755257-3765256 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307835 5265 Fabidae View MSA
124074798 5270 Rosid View MSA
123738885 5271 Pentapetalae View MSA
122790023 5272 Eudicot View MSA
122045893 5273 Angiosperm View MSA
121347200 5274 Embryophyte View MSA
123425101 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain