Gene : Tp57577_TGAC_v2_gene9533 T. pratense v2
Defline:  (1 of 2) PTHR31375:SF46 - PECTIN LYASE-LIKE PROTEIN Genomic Order:  342
Name:  ? Tp57577_TGAC_v2_gene9533 Secondary Identifier:  ? PAC:35984211
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene9533 0.5kb upstream 0.5kb upstream 5952 true Tp57577_TGAC_v2_LG5: 3566315-3572266 Trifolium pratense
Tp57577_TGAC_v2_gene9533 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 3571767-3572266 Trifolium pratense
Tp57577_TGAC_v2_gene9533 0.5kb downstream 0.5kb downstream 5952 true Tp57577_TGAC_v2_LG5: 3565815-3571766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 3565815-3566314 Trifolium pratense
Tp57577_TGAC_v2_gene9533 1.0kb upstream 1.0kb upstream 6452 true Tp57577_TGAC_v2_LG5: 3566315-3572766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 3571767-3572766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 1.0kb downstream 1.0kb downstream 6452 true Tp57577_TGAC_v2_LG5: 3565315-3571766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 3565315-3566314 Trifolium pratense
Tp57577_TGAC_v2_gene9533 2.0kb upstream 2.0kb upstream 7452 true Tp57577_TGAC_v2_LG5: 3566315-3573766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 3571767-3573766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 2.0kb downstream 2.0kb downstream 7452 true Tp57577_TGAC_v2_LG5: 3564315-3571766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 3564315-3566314 Trifolium pratense
Tp57577_TGAC_v2_gene9533 5.0kb upstream 5.0kb upstream 10452 true Tp57577_TGAC_v2_LG5: 3566315-3576766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 3571767-3576766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 5.0kb downstream 5.0kb downstream 10452 true Tp57577_TGAC_v2_LG5: 3561315-3571766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 3561315-3566314 Trifolium pratense
Tp57577_TGAC_v2_gene9533 10.0kb upstream 10.0kb upstream 15452 true Tp57577_TGAC_v2_LG5: 3566315-3581766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 3571767-3581766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 10.0kb downstream 10.0kb downstream 15452 true Tp57577_TGAC_v2_LG5: 3556315-3571766 Trifolium pratense
Tp57577_TGAC_v2_gene9533 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 3556315-3566314 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122295475 5265 Fabidae View MSA
124069047 5270 Rosid View MSA
123746876 5271 Pentapetalae View MSA
122793930 5272 Eudicot View MSA
122049793 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain