Gene : Tp57577_TGAC_v2_gene14238 T. pratense v2
Defline:  (1 of 13) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  2070
Name:  ? Tp57577_TGAC_v2_gene14238 Secondary Identifier:  ? PAC:35976589
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene14238 0.5kb upstream 0.5kb upstream 1619 true Tp57577_TGAC_v2_LG6: 17743375-17744993 Trifolium pratense
Tp57577_TGAC_v2_gene14238 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 17744494-17744993 Trifolium pratense
Tp57577_TGAC_v2_gene14238 0.5kb downstream 0.5kb downstream 1619 true Tp57577_TGAC_v2_LG6: 17742875-17744493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 17742875-17743374 Trifolium pratense
Tp57577_TGAC_v2_gene14238 1.0kb upstream 1.0kb upstream 2119 true Tp57577_TGAC_v2_LG6: 17743375-17745493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 17744494-17745493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 1.0kb downstream 1.0kb downstream 2119 true Tp57577_TGAC_v2_LG6: 17742375-17744493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 17742375-17743374 Trifolium pratense
Tp57577_TGAC_v2_gene14238 2.0kb upstream 2.0kb upstream 3119 true Tp57577_TGAC_v2_LG6: 17743375-17746493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 17744494-17746493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 2.0kb downstream 2.0kb downstream 3119 true Tp57577_TGAC_v2_LG6: 17741375-17744493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 17741375-17743374 Trifolium pratense
Tp57577_TGAC_v2_gene14238 5.0kb upstream 5.0kb upstream 6119 true Tp57577_TGAC_v2_LG6: 17743375-17749493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 17744494-17749493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 5.0kb downstream 5.0kb downstream 6119 true Tp57577_TGAC_v2_LG6: 17738375-17744493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 17738375-17743374 Trifolium pratense
Tp57577_TGAC_v2_gene14238 10.0kb upstream 10.0kb upstream 11119 true Tp57577_TGAC_v2_LG6: 17743375-17754493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 17744494-17754493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 10.0kb downstream 10.0kb downstream 11119 true Tp57577_TGAC_v2_LG6: 17733375-17744493 Trifolium pratense
Tp57577_TGAC_v2_gene14238 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 17733375-17743374 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298040 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain