Gene : Tp57577_TGAC_v2_gene39045 T. pratense v2
Defline:  (1 of 1) PTHR23163:SF3 - E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 Genomic Order:  2181
Name:  ? Tp57577_TGAC_v2_gene39045 Secondary Identifier:  ? PAC:35976381
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene39045 0.5kb upstream 0.5kb upstream 17042 true Tp57577_TGAC_v2_LG6: 18747274-18764315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 18747274-18747773 Trifolium pratense
Tp57577_TGAC_v2_gene39045 0.5kb downstream 0.5kb downstream 17042 true Tp57577_TGAC_v2_LG6: 18747774-18764815 Trifolium pratense
Tp57577_TGAC_v2_gene39045 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 18764316-18764815 Trifolium pratense
Tp57577_TGAC_v2_gene39045 1.0kb upstream 1.0kb upstream 17542 true Tp57577_TGAC_v2_LG6: 18746774-18764315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 18746774-18747773 Trifolium pratense
Tp57577_TGAC_v2_gene39045 1.0kb downstream 1.0kb downstream 17542 true Tp57577_TGAC_v2_LG6: 18747774-18765315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 18764316-18765315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 2.0kb upstream 2.0kb upstream 18542 true Tp57577_TGAC_v2_LG6: 18745774-18764315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 18745774-18747773 Trifolium pratense
Tp57577_TGAC_v2_gene39045 2.0kb downstream 2.0kb downstream 18542 true Tp57577_TGAC_v2_LG6: 18747774-18766315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 18764316-18766315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 5.0kb upstream 5.0kb upstream 21542 true Tp57577_TGAC_v2_LG6: 18742774-18764315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 18742774-18747773 Trifolium pratense
Tp57577_TGAC_v2_gene39045 5.0kb downstream 5.0kb downstream 21542 true Tp57577_TGAC_v2_LG6: 18747774-18769315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 18764316-18769315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 10.0kb upstream 10.0kb upstream 26542 true Tp57577_TGAC_v2_LG6: 18737774-18764315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 18737774-18747773 Trifolium pratense
Tp57577_TGAC_v2_gene39045 10.0kb downstream 10.0kb downstream 26542 true Tp57577_TGAC_v2_LG6: 18747774-18774315 Trifolium pratense
Tp57577_TGAC_v2_gene39045 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 18764316-18774315 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307119 5265 Fabidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain