Gene : Tp57577_TGAC_v2_gene9726 T. pratense v2
Defline:  (1 of 4) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  2642
Name:  ? Tp57577_TGAC_v2_gene9726 Secondary Identifier:  ? PAC:35974646
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6809 Trifolium pratense pathologic  
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene9726 0.5kb upstream 0.5kb upstream 4768 true Tp57577_TGAC_v2_LG6: 22656876-22661643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 22656876-22657375 Trifolium pratense
Tp57577_TGAC_v2_gene9726 0.5kb downstream 0.5kb downstream 4768 true Tp57577_TGAC_v2_LG6: 22657376-22662143 Trifolium pratense
Tp57577_TGAC_v2_gene9726 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 22661644-22662143 Trifolium pratense
Tp57577_TGAC_v2_gene9726 1.0kb upstream 1.0kb upstream 5268 true Tp57577_TGAC_v2_LG6: 22656376-22661643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 22656376-22657375 Trifolium pratense
Tp57577_TGAC_v2_gene9726 1.0kb downstream 1.0kb downstream 5268 true Tp57577_TGAC_v2_LG6: 22657376-22662643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 22661644-22662643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 2.0kb upstream 2.0kb upstream 6268 true Tp57577_TGAC_v2_LG6: 22655376-22661643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 22655376-22657375 Trifolium pratense
Tp57577_TGAC_v2_gene9726 2.0kb downstream 2.0kb downstream 6268 true Tp57577_TGAC_v2_LG6: 22657376-22663643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 22661644-22663643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 5.0kb upstream 5.0kb upstream 9268 true Tp57577_TGAC_v2_LG6: 22652376-22661643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 22652376-22657375 Trifolium pratense
Tp57577_TGAC_v2_gene9726 5.0kb downstream 5.0kb downstream 9268 true Tp57577_TGAC_v2_LG6: 22657376-22666643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 22661644-22666643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 10.0kb upstream 10.0kb upstream 14268 true Tp57577_TGAC_v2_LG6: 22647376-22661643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 22647376-22657375 Trifolium pratense
Tp57577_TGAC_v2_gene9726 10.0kb downstream 10.0kb downstream 14268 true Tp57577_TGAC_v2_LG6: 22657376-22671643 Trifolium pratense
Tp57577_TGAC_v2_gene9726 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 22661644-22671643 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain