Gene : Tp57577_TGAC_v2_gene1375 T. pratense v2
Defline:  (1 of 5) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  859
Name:  ? Tp57577_TGAC_v2_gene1375 Secondary Identifier:  ? PAC:35957209
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene1375 0.5kb upstream 0.5kb upstream 4920 true Tp57577_TGAC_v2_LG7: 6543288-6548207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 6543288-6543787 Trifolium pratense
Tp57577_TGAC_v2_gene1375 0.5kb downstream 0.5kb downstream 4920 true Tp57577_TGAC_v2_LG7: 6543788-6548707 Trifolium pratense
Tp57577_TGAC_v2_gene1375 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 6548208-6548707 Trifolium pratense
Tp57577_TGAC_v2_gene1375 1.0kb upstream 1.0kb upstream 5420 true Tp57577_TGAC_v2_LG7: 6542788-6548207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 6542788-6543787 Trifolium pratense
Tp57577_TGAC_v2_gene1375 1.0kb downstream 1.0kb downstream 5420 true Tp57577_TGAC_v2_LG7: 6543788-6549207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 6548208-6549207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 2.0kb upstream 2.0kb upstream 6420 true Tp57577_TGAC_v2_LG7: 6541788-6548207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 6541788-6543787 Trifolium pratense
Tp57577_TGAC_v2_gene1375 2.0kb downstream 2.0kb downstream 6420 true Tp57577_TGAC_v2_LG7: 6543788-6550207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 6548208-6550207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 5.0kb upstream 5.0kb upstream 9420 true Tp57577_TGAC_v2_LG7: 6538788-6548207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 6538788-6543787 Trifolium pratense
Tp57577_TGAC_v2_gene1375 5.0kb downstream 5.0kb downstream 9420 true Tp57577_TGAC_v2_LG7: 6543788-6553207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 6548208-6553207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 10.0kb upstream 10.0kb upstream 14420 true Tp57577_TGAC_v2_LG7: 6533788-6548207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 6533788-6543787 Trifolium pratense
Tp57577_TGAC_v2_gene1375 10.0kb downstream 10.0kb downstream 14420 true Tp57577_TGAC_v2_LG7: 6543788-6558207 Trifolium pratense
Tp57577_TGAC_v2_gene1375 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 6548208-6558207 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302721 5265 Fabidae View MSA
124074147 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain