Gene : Tp57577_TGAC_v2_gene1382 T. pratense v2
Defline:  (1 of 5) 1.13.11.51 - 9-cis-epoxycarotenoid dioxygenase / VP14 Genomic Order:  858
Name:  ? Tp57577_TGAC_v2_gene1382 Secondary Identifier:  ? PAC:35957361
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene1382 0.5kb upstream 0.5kb upstream 6595 true Tp57577_TGAC_v2_LG7: 6531428-6538022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 6531428-6531927 Trifolium pratense
Tp57577_TGAC_v2_gene1382 0.5kb downstream 0.5kb downstream 6595 true Tp57577_TGAC_v2_LG7: 6531928-6538522 Trifolium pratense
Tp57577_TGAC_v2_gene1382 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 6538023-6538522 Trifolium pratense
Tp57577_TGAC_v2_gene1382 1.0kb upstream 1.0kb upstream 7095 true Tp57577_TGAC_v2_LG7: 6530928-6538022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 6530928-6531927 Trifolium pratense
Tp57577_TGAC_v2_gene1382 1.0kb downstream 1.0kb downstream 7095 true Tp57577_TGAC_v2_LG7: 6531928-6539022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 6538023-6539022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 2.0kb upstream 2.0kb upstream 8095 true Tp57577_TGAC_v2_LG7: 6529928-6538022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 6529928-6531927 Trifolium pratense
Tp57577_TGAC_v2_gene1382 2.0kb downstream 2.0kb downstream 8095 true Tp57577_TGAC_v2_LG7: 6531928-6540022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 6538023-6540022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 5.0kb upstream 5.0kb upstream 11095 true Tp57577_TGAC_v2_LG7: 6526928-6538022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 6526928-6531927 Trifolium pratense
Tp57577_TGAC_v2_gene1382 5.0kb downstream 5.0kb downstream 11095 true Tp57577_TGAC_v2_LG7: 6531928-6543022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 6538023-6543022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 10.0kb upstream 10.0kb upstream 16095 true Tp57577_TGAC_v2_LG7: 6521928-6538022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 6521928-6531927 Trifolium pratense
Tp57577_TGAC_v2_gene1382 10.0kb downstream 10.0kb downstream 16095 true Tp57577_TGAC_v2_LG7: 6531928-6548022 Trifolium pratense
Tp57577_TGAC_v2_gene1382 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 6538023-6548022 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302721 5265 Fabidae View MSA
124074147 5270 Rosid View MSA
123748697 5271 Pentapetalae View MSA
122795171 5272 Eudicot View MSA
122051607 5273 Angiosperm View MSA
121349725 5274 Embryophyte View MSA
123381417 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain