Gene : Tp57577_TGAC_v2_gene19882 T. pratense v2
Defline:  (1 of 2) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  2301
Name:  ? Tp57577_TGAC_v2_gene19882 Secondary Identifier:  ? PAC:35957342
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7511 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene19882 0.5kb upstream 0.5kb upstream 9801 true Tp57577_TGAC_v2_LG7: 20014497-20024297 Trifolium pratense
Tp57577_TGAC_v2_gene19882 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 20023798-20024297 Trifolium pratense
Tp57577_TGAC_v2_gene19882 0.5kb downstream 0.5kb downstream 9801 true Tp57577_TGAC_v2_LG7: 20013997-20023797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 20013997-20014496 Trifolium pratense
Tp57577_TGAC_v2_gene19882 1.0kb upstream 1.0kb upstream 10301 true Tp57577_TGAC_v2_LG7: 20014497-20024797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 20023798-20024797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 1.0kb downstream 1.0kb downstream 10301 true Tp57577_TGAC_v2_LG7: 20013497-20023797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 20013497-20014496 Trifolium pratense
Tp57577_TGAC_v2_gene19882 2.0kb upstream 2.0kb upstream 11301 true Tp57577_TGAC_v2_LG7: 20014497-20025797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 20023798-20025797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 2.0kb downstream 2.0kb downstream 11301 true Tp57577_TGAC_v2_LG7: 20012497-20023797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 20012497-20014496 Trifolium pratense
Tp57577_TGAC_v2_gene19882 5.0kb upstream 5.0kb upstream 14301 true Tp57577_TGAC_v2_LG7: 20014497-20028797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 20023798-20028797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 5.0kb downstream 5.0kb downstream 14301 true Tp57577_TGAC_v2_LG7: 20009497-20023797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 20009497-20014496 Trifolium pratense
Tp57577_TGAC_v2_gene19882 10.0kb upstream 10.0kb upstream 19301 true Tp57577_TGAC_v2_LG7: 20014497-20033797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 20023798-20033797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 10.0kb downstream 10.0kb downstream 19301 true Tp57577_TGAC_v2_LG7: 20004497-20023797 Trifolium pratense
Tp57577_TGAC_v2_gene19882 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 20004497-20014496 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299997 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain