Gene : Tp57577_TGAC_v2_gene20285 T. pratense v2
Defline:  (1 of 4) K13789 - geranylgeranyl diphosphate synthase, type II (GGPS) Genomic Order:  1027
Name:  ? Tp57577_TGAC_v2_gene20285 Secondary Identifier:  ? PAC:35957709
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5120 Trifolium pratense pathologic  
Tpratense PWY-5910 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene20285 0.5kb upstream 0.5kb upstream 1892 true Tp57577_TGAC_v2_LG7: 7874942-7876833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 7874942-7875441 Trifolium pratense
Tp57577_TGAC_v2_gene20285 0.5kb downstream 0.5kb downstream 1892 true Tp57577_TGAC_v2_LG7: 7875442-7877333 Trifolium pratense
Tp57577_TGAC_v2_gene20285 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 7876834-7877333 Trifolium pratense
Tp57577_TGAC_v2_gene20285 1.0kb upstream 1.0kb upstream 2392 true Tp57577_TGAC_v2_LG7: 7874442-7876833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 7874442-7875441 Trifolium pratense
Tp57577_TGAC_v2_gene20285 1.0kb downstream 1.0kb downstream 2392 true Tp57577_TGAC_v2_LG7: 7875442-7877833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 7876834-7877833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 2.0kb upstream 2.0kb upstream 3392 true Tp57577_TGAC_v2_LG7: 7873442-7876833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 7873442-7875441 Trifolium pratense
Tp57577_TGAC_v2_gene20285 2.0kb downstream 2.0kb downstream 3392 true Tp57577_TGAC_v2_LG7: 7875442-7878833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 7876834-7878833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 5.0kb upstream 5.0kb upstream 6392 true Tp57577_TGAC_v2_LG7: 7870442-7876833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 7870442-7875441 Trifolium pratense
Tp57577_TGAC_v2_gene20285 5.0kb downstream 5.0kb downstream 6392 true Tp57577_TGAC_v2_LG7: 7875442-7881833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 7876834-7881833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 10.0kb upstream 10.0kb upstream 11392 true Tp57577_TGAC_v2_LG7: 7865442-7876833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 7865442-7875441 Trifolium pratense
Tp57577_TGAC_v2_gene20285 10.0kb downstream 10.0kb downstream 11392 true Tp57577_TGAC_v2_LG7: 7875442-7886833 Trifolium pratense
Tp57577_TGAC_v2_gene20285 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 7876834-7886833 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300633 5265 Fabidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain