Gene : Tp57577_TGAC_v2_gene37158 T. pratense v2
Defline:  (1 of 96) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  135
Name:  ? Tp57577_TGAC_v2_gene37158 Secondary Identifier:  ? PAC:35957415
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene37158 0.5kb upstream 0.5kb upstream 5025 true Tp57577_TGAC_v2_LG7: 987753-992777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 987753-988252 Trifolium pratense
Tp57577_TGAC_v2_gene37158 0.5kb downstream 0.5kb downstream 5025 true Tp57577_TGAC_v2_LG7: 988253-993277 Trifolium pratense
Tp57577_TGAC_v2_gene37158 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 992778-993277 Trifolium pratense
Tp57577_TGAC_v2_gene37158 1.0kb upstream 1.0kb upstream 5525 true Tp57577_TGAC_v2_LG7: 987253-992777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 987253-988252 Trifolium pratense
Tp57577_TGAC_v2_gene37158 1.0kb downstream 1.0kb downstream 5525 true Tp57577_TGAC_v2_LG7: 988253-993777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 992778-993777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 2.0kb upstream 2.0kb upstream 6525 true Tp57577_TGAC_v2_LG7: 986253-992777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 986253-988252 Trifolium pratense
Tp57577_TGAC_v2_gene37158 2.0kb downstream 2.0kb downstream 6525 true Tp57577_TGAC_v2_LG7: 988253-994777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 992778-994777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 5.0kb upstream 5.0kb upstream 9525 true Tp57577_TGAC_v2_LG7: 983253-992777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 983253-988252 Trifolium pratense
Tp57577_TGAC_v2_gene37158 5.0kb downstream 5.0kb downstream 9525 true Tp57577_TGAC_v2_LG7: 988253-997777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 992778-997777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 10.0kb upstream 10.0kb upstream 14525 true Tp57577_TGAC_v2_LG7: 978253-992777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 978253-988252 Trifolium pratense
Tp57577_TGAC_v2_gene37158 10.0kb downstream 10.0kb downstream 14525 true Tp57577_TGAC_v2_LG7: 988253-1002777 Trifolium pratense
Tp57577_TGAC_v2_gene37158 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 992778-1002777 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain