Gene : Tp57577_TGAC_v2_gene38581 T. pratense v2
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  349
Name:  ? Tp57577_TGAC_v2_gene38581 Secondary Identifier:  ? PAC:35955119
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense TRNA-CHARGING-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene38581 0.5kb upstream 0.5kb upstream 9720 true Tp57577_TGAC_v2_LG7: 2595775-2605494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 2595775-2596274 Trifolium pratense
Tp57577_TGAC_v2_gene38581 0.5kb downstream 0.5kb downstream 9720 true Tp57577_TGAC_v2_LG7: 2596275-2605994 Trifolium pratense
Tp57577_TGAC_v2_gene38581 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 2605495-2605994 Trifolium pratense
Tp57577_TGAC_v2_gene38581 1.0kb upstream 1.0kb upstream 10220 true Tp57577_TGAC_v2_LG7: 2595275-2605494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 2595275-2596274 Trifolium pratense
Tp57577_TGAC_v2_gene38581 1.0kb downstream 1.0kb downstream 10220 true Tp57577_TGAC_v2_LG7: 2596275-2606494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 2605495-2606494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 2.0kb upstream 2.0kb upstream 11220 true Tp57577_TGAC_v2_LG7: 2594275-2605494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 2594275-2596274 Trifolium pratense
Tp57577_TGAC_v2_gene38581 2.0kb downstream 2.0kb downstream 11220 true Tp57577_TGAC_v2_LG7: 2596275-2607494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 2605495-2607494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 5.0kb upstream 5.0kb upstream 14220 true Tp57577_TGAC_v2_LG7: 2591275-2605494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 2591275-2596274 Trifolium pratense
Tp57577_TGAC_v2_gene38581 5.0kb downstream 5.0kb downstream 14220 true Tp57577_TGAC_v2_LG7: 2596275-2610494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 2605495-2610494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 10.0kb upstream 10.0kb upstream 19220 true Tp57577_TGAC_v2_LG7: 2586275-2605494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 2586275-2596274 Trifolium pratense
Tp57577_TGAC_v2_gene38581 10.0kb downstream 10.0kb downstream 19220 true Tp57577_TGAC_v2_LG7: 2596275-2615494 Trifolium pratense
Tp57577_TGAC_v2_gene38581 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 2605495-2615494 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309054 5265 Fabidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain