Gene : Tp57577_TGAC_v2_gene27357 T. pratense v2
Defline:  (1 of 2) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  3
Name:  ? Tp57577_TGAC_v2_gene27357 Secondary Identifier:  ? PAC:35986166
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CYSTSYN-PWY Trifolium pratense pathologic  
Tpratense PWY-6936 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene27357 0.5kb upstream 0.5kb upstream 4995 true Tp57577_TGAC_v2_scaf_1069: 16216-21210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1069: 16216-16715 Trifolium pratense
Tp57577_TGAC_v2_gene27357 0.5kb downstream 0.5kb downstream 4995 true Tp57577_TGAC_v2_scaf_1069: 16716-21710 Trifolium pratense
Tp57577_TGAC_v2_gene27357 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1069: 21211-21710 Trifolium pratense
Tp57577_TGAC_v2_gene27357 1.0kb upstream 1.0kb upstream 5495 true Tp57577_TGAC_v2_scaf_1069: 15716-21210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1069: 15716-16715 Trifolium pratense
Tp57577_TGAC_v2_gene27357 1.0kb downstream 1.0kb downstream 5495 true Tp57577_TGAC_v2_scaf_1069: 16716-22210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1069: 21211-22210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 2.0kb upstream 2.0kb upstream 6495 true Tp57577_TGAC_v2_scaf_1069: 14716-21210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1069: 14716-16715 Trifolium pratense
Tp57577_TGAC_v2_gene27357 2.0kb downstream 2.0kb downstream 6495 true Tp57577_TGAC_v2_scaf_1069: 16716-23210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1069: 21211-23210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 5.0kb upstream 5.0kb upstream 9495 true Tp57577_TGAC_v2_scaf_1069: 11716-21210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1069: 11716-16715 Trifolium pratense
Tp57577_TGAC_v2_gene27357 5.0kb downstream 5.0kb downstream 9495 true Tp57577_TGAC_v2_scaf_1069: 16716-26210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_1069: 21211-26210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 10.0kb upstream 10.0kb upstream 14495 true Tp57577_TGAC_v2_scaf_1069: 6716-21210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_1069: 6716-16715 Trifolium pratense
Tp57577_TGAC_v2_gene27357 10.0kb downstream 10.0kb downstream 14495 true Tp57577_TGAC_v2_scaf_1069: 16716-31210 Trifolium pratense
Tp57577_TGAC_v2_gene27357 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_1069: 21211-31210 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300401 5265 Fabidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain