Gene : Tp57577_TGAC_v2_gene29491 T. pratense v2
Defline:  (1 of 2) K06444 - lycopene epsilon-cyclase (lcyE, crtL2) Genomic Order:  4
Name:  ? Tp57577_TGAC_v2_gene29491 Secondary Identifier:  ? PAC:35961674
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CAROTENOID-PWY Trifolium pratense pathologic  
Tpratense PWY-5175 Trifolium pratense pathologic  
Tpratense PWY-5946 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene29491 0.5kb upstream 0.5kb upstream 5258 true Tp57577_TGAC_v2_scaf_1177: 30673-35930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1177: 30673-31172 Trifolium pratense
Tp57577_TGAC_v2_gene29491 0.5kb downstream 0.5kb downstream 5258 true Tp57577_TGAC_v2_scaf_1177: 31173-36430 Trifolium pratense
Tp57577_TGAC_v2_gene29491 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1177: 35931-36430 Trifolium pratense
Tp57577_TGAC_v2_gene29491 1.0kb upstream 1.0kb upstream 5758 true Tp57577_TGAC_v2_scaf_1177: 30173-35930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1177: 30173-31172 Trifolium pratense
Tp57577_TGAC_v2_gene29491 1.0kb downstream 1.0kb downstream 5758 true Tp57577_TGAC_v2_scaf_1177: 31173-36930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1177: 35931-36930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 2.0kb upstream 2.0kb upstream 6758 true Tp57577_TGAC_v2_scaf_1177: 29173-35930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1177: 29173-31172 Trifolium pratense
Tp57577_TGAC_v2_gene29491 2.0kb downstream 2.0kb downstream 6758 true Tp57577_TGAC_v2_scaf_1177: 31173-37930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1177: 35931-37930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 5.0kb upstream 5.0kb upstream 9758 true Tp57577_TGAC_v2_scaf_1177: 26173-35930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1177: 26173-31172 Trifolium pratense
Tp57577_TGAC_v2_gene29491 5.0kb downstream 5.0kb downstream 9758 true Tp57577_TGAC_v2_scaf_1177: 31173-40930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_1177: 35931-40930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 10.0kb upstream 10.0kb upstream 14758 true Tp57577_TGAC_v2_scaf_1177: 21173-35930 Trifolium pratense
Tp57577_TGAC_v2_gene29491 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_1177: 21173-31172 Trifolium pratense
Tp57577_TGAC_v2_gene29491 10.0kb downstream 10.0kb downstream 13550 true Tp57577_TGAC_v2_scaf_1177: 31173-44722 Trifolium pratense
Tp57577_TGAC_v2_gene29491 10.0kb downstream 10.0kb downstream 8792 false Tp57577_TGAC_v2_scaf_1177: 35931-44722 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305319 5265 Fabidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain