Gene : Tp57577_TGAC_v2_gene20717 T. pratense v2
Defline:  (1 of 3) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  1
Name:  ? Tp57577_TGAC_v2_gene20717 Secondary Identifier:  ? PAC:35983187
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense GLYOXYLATE-BYPASS Trifolium pratense pathologic  
Tpratense PWY-5464 Trifolium pratense pathologic  
Tpratense PWY-561 Trifolium pratense pathologic  
Tpratense PWY-5690 Trifolium pratense pathologic  
Tpratense PWY-6549 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene20717 0.5kb upstream 0.5kb upstream 5579 true Tp57577_TGAC_v2_scaf_1228: 4087-9665 Trifolium pratense
Tp57577_TGAC_v2_gene20717 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1228: 9166-9665 Trifolium pratense
Tp57577_TGAC_v2_gene20717 0.5kb downstream 0.5kb downstream 5579 true Tp57577_TGAC_v2_scaf_1228: 3587-9165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1228: 3587-4086 Trifolium pratense
Tp57577_TGAC_v2_gene20717 1.0kb upstream 1.0kb upstream 6079 true Tp57577_TGAC_v2_scaf_1228: 4087-10165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1228: 9166-10165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 1.0kb downstream 1.0kb downstream 6079 true Tp57577_TGAC_v2_scaf_1228: 3087-9165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1228: 3087-4086 Trifolium pratense
Tp57577_TGAC_v2_gene20717 2.0kb upstream 2.0kb upstream 7079 true Tp57577_TGAC_v2_scaf_1228: 4087-11165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1228: 9166-11165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 2.0kb downstream 2.0kb downstream 7079 true Tp57577_TGAC_v2_scaf_1228: 2087-9165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1228: 2087-4086 Trifolium pratense
Tp57577_TGAC_v2_gene20717 5.0kb upstream 5.0kb upstream 10079 true Tp57577_TGAC_v2_scaf_1228: 4087-14165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1228: 9166-14165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 5.0kb downstream 5.0kb downstream 9165 true Tp57577_TGAC_v2_scaf_1228: 1-9165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 5.0kb downstream 5.0kb downstream 4086 false Tp57577_TGAC_v2_scaf_1228: 1-4086 Trifolium pratense
Tp57577_TGAC_v2_gene20717 10.0kb upstream 10.0kb upstream 15079 true Tp57577_TGAC_v2_scaf_1228: 4087-19165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_1228: 9166-19165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 10.0kb downstream 10.0kb downstream 9165 true Tp57577_TGAC_v2_scaf_1228: 1-9165 Trifolium pratense
Tp57577_TGAC_v2_gene20717 10.0kb downstream 10.0kb downstream 4086 false Tp57577_TGAC_v2_scaf_1228: 1-4086 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309645 5265 Fabidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain