Gene : Tp57577_TGAC_v2_gene23289 T. pratense v2
Defline:  (1 of 3) PTHR11709:SF66 - LACCASE-17 Genomic Order:  22
Name:  ? Tp57577_TGAC_v2_gene23289 Secondary Identifier:  ? PAC:35982585
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5466 Trifolium pratense pathologic  
Tpratense PWY-6824 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene23289 0.5kb upstream 0.5kb upstream 5069 true Tp57577_TGAC_v2_scaf_130: 188207-193275 Trifolium pratense
Tp57577_TGAC_v2_gene23289 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_130: 192776-193275 Trifolium pratense
Tp57577_TGAC_v2_gene23289 0.5kb downstream 0.5kb downstream 5069 true Tp57577_TGAC_v2_scaf_130: 187707-192775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_130: 187707-188206 Trifolium pratense
Tp57577_TGAC_v2_gene23289 1.0kb upstream 1.0kb upstream 5569 true Tp57577_TGAC_v2_scaf_130: 188207-193775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_130: 192776-193775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 1.0kb downstream 1.0kb downstream 5569 true Tp57577_TGAC_v2_scaf_130: 187207-192775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_130: 187207-188206 Trifolium pratense
Tp57577_TGAC_v2_gene23289 2.0kb upstream 2.0kb upstream 6569 true Tp57577_TGAC_v2_scaf_130: 188207-194775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_130: 192776-194775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 2.0kb downstream 2.0kb downstream 6569 true Tp57577_TGAC_v2_scaf_130: 186207-192775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_130: 186207-188206 Trifolium pratense
Tp57577_TGAC_v2_gene23289 5.0kb upstream 5.0kb upstream 9569 true Tp57577_TGAC_v2_scaf_130: 188207-197775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_130: 192776-197775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 5.0kb downstream 5.0kb downstream 9569 true Tp57577_TGAC_v2_scaf_130: 183207-192775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_130: 183207-188206 Trifolium pratense
Tp57577_TGAC_v2_gene23289 10.0kb upstream 10.0kb upstream 14569 true Tp57577_TGAC_v2_scaf_130: 188207-202775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_130: 192776-202775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 10.0kb downstream 10.0kb downstream 14569 true Tp57577_TGAC_v2_scaf_130: 178207-192775 Trifolium pratense
Tp57577_TGAC_v2_gene23289 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_130: 178207-188206 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313591 5265 Fabidae View MSA
124062715 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain