Gene : Tp57577_TGAC_v2_gene28944 T. pratense v2
Defline:  (1 of 59) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  5
Name:  ? Tp57577_TGAC_v2_gene28944 Secondary Identifier:  ? PAC:35967478
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene28944 0.5kb upstream 0.5kb upstream 2904 true Tp57577_TGAC_v2_scaf_833: 46696-49599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_833: 46696-47195 Trifolium pratense
Tp57577_TGAC_v2_gene28944 0.5kb downstream 0.5kb downstream 2904 true Tp57577_TGAC_v2_scaf_833: 47196-50099 Trifolium pratense
Tp57577_TGAC_v2_gene28944 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_833: 49600-50099 Trifolium pratense
Tp57577_TGAC_v2_gene28944 1.0kb upstream 1.0kb upstream 3404 true Tp57577_TGAC_v2_scaf_833: 46196-49599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_833: 46196-47195 Trifolium pratense
Tp57577_TGAC_v2_gene28944 1.0kb downstream 1.0kb downstream 3404 true Tp57577_TGAC_v2_scaf_833: 47196-50599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_833: 49600-50599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 2.0kb upstream 2.0kb upstream 4404 true Tp57577_TGAC_v2_scaf_833: 45196-49599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_833: 45196-47195 Trifolium pratense
Tp57577_TGAC_v2_gene28944 2.0kb downstream 2.0kb downstream 4404 true Tp57577_TGAC_v2_scaf_833: 47196-51599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_833: 49600-51599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 5.0kb upstream 5.0kb upstream 7404 true Tp57577_TGAC_v2_scaf_833: 42196-49599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_833: 42196-47195 Trifolium pratense
Tp57577_TGAC_v2_gene28944 5.0kb downstream 5.0kb downstream 7404 true Tp57577_TGAC_v2_scaf_833: 47196-54599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_833: 49600-54599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 10.0kb upstream 10.0kb upstream 12404 true Tp57577_TGAC_v2_scaf_833: 37196-49599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_833: 37196-47195 Trifolium pratense
Tp57577_TGAC_v2_gene28944 10.0kb downstream 10.0kb downstream 12404 true Tp57577_TGAC_v2_scaf_833: 47196-59599 Trifolium pratense
Tp57577_TGAC_v2_gene28944 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_833: 49600-59599 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026319 5273 Angiosperm View MSA
122300758 5265 Fabidae View MSA
124064150 5270 Rosid View MSA
123738212 5271 Pentapetalae View MSA
122786215 5272 Eudicot View MSA
121296277 5274 Embryophyte View MSA
123334471 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain