Gene : Tp57577_TGAC_v2_gene25696 T. pratense v2
Defline:  (1 of 16) 1.3.3.8 - Tetrahydroberberine oxidase / THB oxidase Genomic Order:  20
Name:  ? Tp57577_TGAC_v2_gene25696 Secondary Identifier:  ? PAC:35953010
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene25696 0.5kb upstream 0.5kb upstream 2569 true Tp57577_TGAC_v2_scaf_169: 177256-179824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_169: 177256-177755 Trifolium pratense
Tp57577_TGAC_v2_gene25696 0.5kb downstream 0.5kb downstream 2569 true Tp57577_TGAC_v2_scaf_169: 177756-180324 Trifolium pratense
Tp57577_TGAC_v2_gene25696 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_169: 179825-180324 Trifolium pratense
Tp57577_TGAC_v2_gene25696 1.0kb upstream 1.0kb upstream 3069 true Tp57577_TGAC_v2_scaf_169: 176756-179824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_169: 176756-177755 Trifolium pratense
Tp57577_TGAC_v2_gene25696 1.0kb downstream 1.0kb downstream 3069 true Tp57577_TGAC_v2_scaf_169: 177756-180824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_169: 179825-180824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 2.0kb upstream 2.0kb upstream 4069 true Tp57577_TGAC_v2_scaf_169: 175756-179824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_169: 175756-177755 Trifolium pratense
Tp57577_TGAC_v2_gene25696 2.0kb downstream 2.0kb downstream 4069 true Tp57577_TGAC_v2_scaf_169: 177756-181824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_169: 179825-181824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 5.0kb upstream 5.0kb upstream 7069 true Tp57577_TGAC_v2_scaf_169: 172756-179824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_169: 172756-177755 Trifolium pratense
Tp57577_TGAC_v2_gene25696 5.0kb downstream 5.0kb downstream 7069 true Tp57577_TGAC_v2_scaf_169: 177756-184824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_169: 179825-184824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 10.0kb upstream 10.0kb upstream 12069 true Tp57577_TGAC_v2_scaf_169: 167756-179824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_169: 167756-177755 Trifolium pratense
Tp57577_TGAC_v2_gene25696 10.0kb downstream 10.0kb downstream 12069 true Tp57577_TGAC_v2_scaf_169: 177756-189824 Trifolium pratense
Tp57577_TGAC_v2_gene25696 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_169: 179825-189824 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312484 5265 Fabidae View MSA
124073888 5270 Rosid View MSA
123750008 5271 Pentapetalae View MSA
122797707 5272 Eudicot View MSA
122049918 5273 Angiosperm View MSA
121351151 5274 Embryophyte View MSA
123426970 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain