Gene : Tp57577_TGAC_v2_gene40106 T. pratense v2
Defline:  (1 of 5) PTHR11709:SF94 - LACCASE-15 Genomic Order:  3
Name:  ? Tp57577_TGAC_v2_gene40106 Secondary Identifier:  ? PAC:35968748
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5466 Trifolium pratense pathologic  
Tpratense PWY-6824 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene40106 0.5kb upstream 0.5kb upstream 5489 true Tp57577_TGAC_v2_scaf_1482: 15817-21305 Trifolium pratense
Tp57577_TGAC_v2_gene40106 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1482: 20806-21305 Trifolium pratense
Tp57577_TGAC_v2_gene40106 0.5kb downstream 0.5kb downstream 5489 true Tp57577_TGAC_v2_scaf_1482: 15317-20805 Trifolium pratense
Tp57577_TGAC_v2_gene40106 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1482: 15317-15816 Trifolium pratense
Tp57577_TGAC_v2_gene40106 1.0kb upstream 1.0kb upstream 5905 true Tp57577_TGAC_v2_scaf_1482: 15817-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 1.0kb upstream 1.0kb upstream 916 false Tp57577_TGAC_v2_scaf_1482: 20806-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 1.0kb downstream 1.0kb downstream 5989 true Tp57577_TGAC_v2_scaf_1482: 14817-20805 Trifolium pratense
Tp57577_TGAC_v2_gene40106 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1482: 14817-15816 Trifolium pratense
Tp57577_TGAC_v2_gene40106 2.0kb upstream 2.0kb upstream 5905 true Tp57577_TGAC_v2_scaf_1482: 15817-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 2.0kb upstream 2.0kb upstream 916 false Tp57577_TGAC_v2_scaf_1482: 20806-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 2.0kb downstream 2.0kb downstream 6989 true Tp57577_TGAC_v2_scaf_1482: 13817-20805 Trifolium pratense
Tp57577_TGAC_v2_gene40106 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1482: 13817-15816 Trifolium pratense
Tp57577_TGAC_v2_gene40106 5.0kb upstream 5.0kb upstream 5905 true Tp57577_TGAC_v2_scaf_1482: 15817-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 5.0kb upstream 5.0kb upstream 916 false Tp57577_TGAC_v2_scaf_1482: 20806-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 5.0kb downstream 5.0kb downstream 9989 true Tp57577_TGAC_v2_scaf_1482: 10817-20805 Trifolium pratense
Tp57577_TGAC_v2_gene40106 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_1482: 10817-15816 Trifolium pratense
Tp57577_TGAC_v2_gene40106 10.0kb upstream 10.0kb upstream 5905 true Tp57577_TGAC_v2_scaf_1482: 15817-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 10.0kb upstream 10.0kb upstream 916 false Tp57577_TGAC_v2_scaf_1482: 20806-21721 Trifolium pratense
Tp57577_TGAC_v2_gene40106 10.0kb downstream 10.0kb downstream 14989 true Tp57577_TGAC_v2_scaf_1482: 5817-20805 Trifolium pratense
Tp57577_TGAC_v2_gene40106 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_1482: 5817-15816 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314424 5265 Fabidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain