Gene : Tp57577_TGAC_v2_gene21349 T. pratense v2
Defline:  (1 of 2) 5.4.99.8 - Cycloartenol synthase / 2,3-epoxysqualene--cycloartenol cyclase Genomic Order:  20
Name:  ? Tp57577_TGAC_v2_gene21349 Secondary Identifier:  ? PAC:35972424
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-2541 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene21349 0.5kb upstream 0.5kb upstream 10273 true Tp57577_TGAC_v2_LG2: 150546-160818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 150546-151045 Trifolium pratense
Tp57577_TGAC_v2_gene21349 0.5kb downstream 0.5kb downstream 10273 true Tp57577_TGAC_v2_LG2: 151046-161318 Trifolium pratense
Tp57577_TGAC_v2_gene21349 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 160819-161318 Trifolium pratense
Tp57577_TGAC_v2_gene21349 1.0kb upstream 1.0kb upstream 10773 true Tp57577_TGAC_v2_LG2: 150046-160818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 150046-151045 Trifolium pratense
Tp57577_TGAC_v2_gene21349 1.0kb downstream 1.0kb downstream 10773 true Tp57577_TGAC_v2_LG2: 151046-161818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 160819-161818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 2.0kb upstream 2.0kb upstream 11773 true Tp57577_TGAC_v2_LG2: 149046-160818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 149046-151045 Trifolium pratense
Tp57577_TGAC_v2_gene21349 2.0kb downstream 2.0kb downstream 11773 true Tp57577_TGAC_v2_LG2: 151046-162818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 160819-162818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 5.0kb upstream 5.0kb upstream 14773 true Tp57577_TGAC_v2_LG2: 146046-160818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 146046-151045 Trifolium pratense
Tp57577_TGAC_v2_gene21349 5.0kb downstream 5.0kb downstream 14773 true Tp57577_TGAC_v2_LG2: 151046-165818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 160819-165818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 10.0kb upstream 10.0kb upstream 19773 true Tp57577_TGAC_v2_LG2: 141046-160818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 141046-151045 Trifolium pratense
Tp57577_TGAC_v2_gene21349 10.0kb downstream 10.0kb downstream 19773 true Tp57577_TGAC_v2_LG2: 151046-170818 Trifolium pratense
Tp57577_TGAC_v2_gene21349 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 160819-170818 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305993 5265 Fabidae View MSA
124061853 5270 Rosid View MSA
123750129 5271 Pentapetalae View MSA
122795524 5272 Eudicot View MSA
122043543 5273 Angiosperm View MSA
121345283 5274 Embryophyte View MSA
123424991 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain