Gene : Tp57577_TGAC_v2_gene22980 T. pratense v2
Defline:  (1 of 2) K14568 - rRNA small subunit pseudouridine methyltransferase Nep1 (EMG1, NEP1) Genomic Order:  1154
Name:  ? Tp57577_TGAC_v2_gene22980 Secondary Identifier:  ? PAC:35972095
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene22980 0.5kb upstream 0.5kb upstream 12153 true Tp57577_TGAC_v2_LG2: 11292106-11304258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 11292106-11292605 Trifolium pratense
Tp57577_TGAC_v2_gene22980 0.5kb downstream 0.5kb downstream 12153 true Tp57577_TGAC_v2_LG2: 11292606-11304758 Trifolium pratense
Tp57577_TGAC_v2_gene22980 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 11304259-11304758 Trifolium pratense
Tp57577_TGAC_v2_gene22980 1.0kb upstream 1.0kb upstream 12653 true Tp57577_TGAC_v2_LG2: 11291606-11304258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 11291606-11292605 Trifolium pratense
Tp57577_TGAC_v2_gene22980 1.0kb downstream 1.0kb downstream 12653 true Tp57577_TGAC_v2_LG2: 11292606-11305258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 11304259-11305258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 2.0kb upstream 2.0kb upstream 13653 true Tp57577_TGAC_v2_LG2: 11290606-11304258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 11290606-11292605 Trifolium pratense
Tp57577_TGAC_v2_gene22980 2.0kb downstream 2.0kb downstream 13653 true Tp57577_TGAC_v2_LG2: 11292606-11306258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 11304259-11306258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 5.0kb upstream 5.0kb upstream 16653 true Tp57577_TGAC_v2_LG2: 11287606-11304258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 11287606-11292605 Trifolium pratense
Tp57577_TGAC_v2_gene22980 5.0kb downstream 5.0kb downstream 16653 true Tp57577_TGAC_v2_LG2: 11292606-11309258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 11304259-11309258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 10.0kb upstream 10.0kb upstream 21653 true Tp57577_TGAC_v2_LG2: 11282606-11304258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 11282606-11292605 Trifolium pratense
Tp57577_TGAC_v2_gene22980 10.0kb downstream 10.0kb downstream 21653 true Tp57577_TGAC_v2_LG2: 11292606-11314258 Trifolium pratense
Tp57577_TGAC_v2_gene22980 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 11304259-11314258 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303918 5265 Fabidae View MSA
124066897 5270 Rosid View MSA
123749345 5271 Pentapetalae View MSA
122789424 5272 Eudicot View MSA
122046063 5273 Angiosperm View MSA
121345370 5274 Embryophyte View MSA
123425050 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain