Gene : Tp57577_TGAC_v2_gene19728 T. pratense v2
Defline:  (1 of 4) PTHR11709:SF88 - LACCASE-14 Genomic Order:  2229
Name:  ? Tp57577_TGAC_v2_gene19728 Secondary Identifier:  ? PAC:35970080
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5466 Trifolium pratense pathologic  
Tpratense PWY-6824 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene19728 0.5kb upstream 0.5kb upstream 3971 true Tp57577_TGAC_v2_LG2: 21206578-21210548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 21206578-21207077 Trifolium pratense
Tp57577_TGAC_v2_gene19728 0.5kb downstream 0.5kb downstream 3971 true Tp57577_TGAC_v2_LG2: 21207078-21211048 Trifolium pratense
Tp57577_TGAC_v2_gene19728 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 21210549-21211048 Trifolium pratense
Tp57577_TGAC_v2_gene19728 1.0kb upstream 1.0kb upstream 4471 true Tp57577_TGAC_v2_LG2: 21206078-21210548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 21206078-21207077 Trifolium pratense
Tp57577_TGAC_v2_gene19728 1.0kb downstream 1.0kb downstream 4471 true Tp57577_TGAC_v2_LG2: 21207078-21211548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 21210549-21211548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 2.0kb upstream 2.0kb upstream 5471 true Tp57577_TGAC_v2_LG2: 21205078-21210548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 21205078-21207077 Trifolium pratense
Tp57577_TGAC_v2_gene19728 2.0kb downstream 2.0kb downstream 5471 true Tp57577_TGAC_v2_LG2: 21207078-21212548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 21210549-21212548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 5.0kb upstream 5.0kb upstream 8471 true Tp57577_TGAC_v2_LG2: 21202078-21210548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 21202078-21207077 Trifolium pratense
Tp57577_TGAC_v2_gene19728 5.0kb downstream 5.0kb downstream 8471 true Tp57577_TGAC_v2_LG2: 21207078-21215548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 21210549-21215548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 10.0kb upstream 10.0kb upstream 13471 true Tp57577_TGAC_v2_LG2: 21197078-21210548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 21197078-21207077 Trifolium pratense
Tp57577_TGAC_v2_gene19728 10.0kb downstream 10.0kb downstream 13471 true Tp57577_TGAC_v2_LG2: 21207078-21220548 Trifolium pratense
Tp57577_TGAC_v2_gene19728 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 21210549-21220548 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314424 5265 Fabidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain