Gene : Tp57577_TGAC_v2_gene29090 T. pratense v2
Defline:  (1 of 34) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  1217
Name:  ? Tp57577_TGAC_v2_gene29090 Secondary Identifier:  ? PAC:35971510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene29090 0.5kb upstream 0.5kb upstream 5570 true Tp57577_TGAC_v2_LG2: 11973748-11979317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 11973748-11974247 Trifolium pratense
Tp57577_TGAC_v2_gene29090 0.5kb downstream 0.5kb downstream 5570 true Tp57577_TGAC_v2_LG2: 11974248-11979817 Trifolium pratense
Tp57577_TGAC_v2_gene29090 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 11979318-11979817 Trifolium pratense
Tp57577_TGAC_v2_gene29090 1.0kb upstream 1.0kb upstream 6070 true Tp57577_TGAC_v2_LG2: 11973248-11979317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 11973248-11974247 Trifolium pratense
Tp57577_TGAC_v2_gene29090 1.0kb downstream 1.0kb downstream 6070 true Tp57577_TGAC_v2_LG2: 11974248-11980317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 11979318-11980317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 2.0kb upstream 2.0kb upstream 7070 true Tp57577_TGAC_v2_LG2: 11972248-11979317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 11972248-11974247 Trifolium pratense
Tp57577_TGAC_v2_gene29090 2.0kb downstream 2.0kb downstream 7070 true Tp57577_TGAC_v2_LG2: 11974248-11981317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 11979318-11981317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 5.0kb upstream 5.0kb upstream 10070 true Tp57577_TGAC_v2_LG2: 11969248-11979317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 11969248-11974247 Trifolium pratense
Tp57577_TGAC_v2_gene29090 5.0kb downstream 5.0kb downstream 10070 true Tp57577_TGAC_v2_LG2: 11974248-11984317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 11979318-11984317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 10.0kb upstream 10.0kb upstream 15070 true Tp57577_TGAC_v2_LG2: 11964248-11979317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 11964248-11974247 Trifolium pratense
Tp57577_TGAC_v2_gene29090 10.0kb downstream 10.0kb downstream 15070 true Tp57577_TGAC_v2_LG2: 11974248-11989317 Trifolium pratense
Tp57577_TGAC_v2_gene29090 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 11979318-11989317 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122296274 5265 Fabidae View MSA
124042732 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain