Gene : Tp57577_TGAC_v2_gene34093 T. pratense v2
Defline:  (1 of 3) K01184 - polygalacturonase (E3.2.1.15) Genomic Order:  3151
Name:  ? Tp57577_TGAC_v2_gene34093 Secondary Identifier:  ? PAC:35971041
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene34093 0.5kb upstream 0.5kb upstream 2846 true Tp57577_TGAC_v2_LG2: 28438101-28440946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 28438101-28438600 Trifolium pratense
Tp57577_TGAC_v2_gene34093 0.5kb downstream 0.5kb downstream 2846 true Tp57577_TGAC_v2_LG2: 28438601-28441446 Trifolium pratense
Tp57577_TGAC_v2_gene34093 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 28440947-28441446 Trifolium pratense
Tp57577_TGAC_v2_gene34093 1.0kb upstream 1.0kb upstream 3346 true Tp57577_TGAC_v2_LG2: 28437601-28440946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 28437601-28438600 Trifolium pratense
Tp57577_TGAC_v2_gene34093 1.0kb downstream 1.0kb downstream 3346 true Tp57577_TGAC_v2_LG2: 28438601-28441946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 28440947-28441946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 2.0kb upstream 2.0kb upstream 4346 true Tp57577_TGAC_v2_LG2: 28436601-28440946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 28436601-28438600 Trifolium pratense
Tp57577_TGAC_v2_gene34093 2.0kb downstream 2.0kb downstream 4346 true Tp57577_TGAC_v2_LG2: 28438601-28442946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 28440947-28442946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 5.0kb upstream 5.0kb upstream 7346 true Tp57577_TGAC_v2_LG2: 28433601-28440946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 28433601-28438600 Trifolium pratense
Tp57577_TGAC_v2_gene34093 5.0kb downstream 5.0kb downstream 7346 true Tp57577_TGAC_v2_LG2: 28438601-28445946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 28440947-28445946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 10.0kb upstream 10.0kb upstream 12346 true Tp57577_TGAC_v2_LG2: 28428601-28440946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 28428601-28438600 Trifolium pratense
Tp57577_TGAC_v2_gene34093 10.0kb downstream 10.0kb downstream 12346 true Tp57577_TGAC_v2_LG2: 28438601-28450946 Trifolium pratense
Tp57577_TGAC_v2_gene34093 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 28440947-28450946 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314468 5265 Fabidae View MSA
124060937 5270 Rosid View MSA
123747300 5271 Pentapetalae View MSA
122794998 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain