Gene : Tp57577_TGAC_v2_gene643 T. pratense v2
Defline:  (1 of 2) K01640 - hydroxymethylglutaryl-CoA lyase (E4.1.3.4, HMGCL, hmgL) Genomic Order:  1
Name:  ? Tp57577_TGAC_v2_gene643 Secondary Identifier:  ? PAC:35953809
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense LEU-DEG2-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene643 0.5kb upstream 0.5kb upstream 4781 true Tp57577_TGAC_v2_scaf_1858: 705-5485 Trifolium pratense
Tp57577_TGAC_v2_gene643 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1858: 4986-5485 Trifolium pratense
Tp57577_TGAC_v2_gene643 0.5kb downstream 0.5kb downstream 4781 true Tp57577_TGAC_v2_scaf_1858: 205-4985 Trifolium pratense
Tp57577_TGAC_v2_gene643 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1858: 205-704 Trifolium pratense
Tp57577_TGAC_v2_gene643 1.0kb upstream 1.0kb upstream 5281 true Tp57577_TGAC_v2_scaf_1858: 705-5985 Trifolium pratense
Tp57577_TGAC_v2_gene643 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1858: 4986-5985 Trifolium pratense
Tp57577_TGAC_v2_gene643 1.0kb downstream 1.0kb downstream 4985 true Tp57577_TGAC_v2_scaf_1858: 1-4985 Trifolium pratense
Tp57577_TGAC_v2_gene643 1.0kb downstream 1.0kb downstream 704 false Tp57577_TGAC_v2_scaf_1858: 1-704 Trifolium pratense
Tp57577_TGAC_v2_gene643 2.0kb upstream 2.0kb upstream 6281 true Tp57577_TGAC_v2_scaf_1858: 705-6985 Trifolium pratense
Tp57577_TGAC_v2_gene643 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1858: 4986-6985 Trifolium pratense
Tp57577_TGAC_v2_gene643 2.0kb downstream 2.0kb downstream 4985 true Tp57577_TGAC_v2_scaf_1858: 1-4985 Trifolium pratense
Tp57577_TGAC_v2_gene643 2.0kb downstream 2.0kb downstream 704 false Tp57577_TGAC_v2_scaf_1858: 1-704 Trifolium pratense
Tp57577_TGAC_v2_gene643 5.0kb upstream 5.0kb upstream 9281 true Tp57577_TGAC_v2_scaf_1858: 705-9985 Trifolium pratense
Tp57577_TGAC_v2_gene643 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1858: 4986-9985 Trifolium pratense
Tp57577_TGAC_v2_gene643 5.0kb downstream 5.0kb downstream 4985 true Tp57577_TGAC_v2_scaf_1858: 1-4985 Trifolium pratense
Tp57577_TGAC_v2_gene643 5.0kb downstream 5.0kb downstream 704 false Tp57577_TGAC_v2_scaf_1858: 1-704 Trifolium pratense
Tp57577_TGAC_v2_gene643 10.0kb upstream 10.0kb upstream 10421 true Tp57577_TGAC_v2_scaf_1858: 705-11125 Trifolium pratense
Tp57577_TGAC_v2_gene643 10.0kb upstream 10.0kb upstream 6140 false Tp57577_TGAC_v2_scaf_1858: 4986-11125 Trifolium pratense
Tp57577_TGAC_v2_gene643 10.0kb downstream 10.0kb downstream 4985 true Tp57577_TGAC_v2_scaf_1858: 1-4985 Trifolium pratense
Tp57577_TGAC_v2_gene643 10.0kb downstream 10.0kb downstream 704 false Tp57577_TGAC_v2_scaf_1858: 1-704 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314208 5265 Fabidae View MSA
124074648 5270 Rosid View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain