Gene : Tp57577_TGAC_v2_gene38344 T. pratense v2
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  2020
Name:  ? Tp57577_TGAC_v2_gene38344 Secondary Identifier:  ? PAC:35971386
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CHLOROPHYLL-SYN Trifolium pratense pathologic  
Tpratense HEME-BIOSYNTHESIS-II Trifolium pratense pathologic  
Tpratense PWY-5918 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene38344 0.5kb upstream 0.5kb upstream 10944 true Tp57577_TGAC_v2_LG2: 19354420-19365363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 19354420-19354919 Trifolium pratense
Tp57577_TGAC_v2_gene38344 0.5kb downstream 0.5kb downstream 10944 true Tp57577_TGAC_v2_LG2: 19354920-19365863 Trifolium pratense
Tp57577_TGAC_v2_gene38344 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 19365364-19365863 Trifolium pratense
Tp57577_TGAC_v2_gene38344 1.0kb upstream 1.0kb upstream 11444 true Tp57577_TGAC_v2_LG2: 19353920-19365363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 19353920-19354919 Trifolium pratense
Tp57577_TGAC_v2_gene38344 1.0kb downstream 1.0kb downstream 11444 true Tp57577_TGAC_v2_LG2: 19354920-19366363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 19365364-19366363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 2.0kb upstream 2.0kb upstream 12444 true Tp57577_TGAC_v2_LG2: 19352920-19365363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 19352920-19354919 Trifolium pratense
Tp57577_TGAC_v2_gene38344 2.0kb downstream 2.0kb downstream 12444 true Tp57577_TGAC_v2_LG2: 19354920-19367363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 19365364-19367363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 5.0kb upstream 5.0kb upstream 15444 true Tp57577_TGAC_v2_LG2: 19349920-19365363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 19349920-19354919 Trifolium pratense
Tp57577_TGAC_v2_gene38344 5.0kb downstream 5.0kb downstream 15444 true Tp57577_TGAC_v2_LG2: 19354920-19370363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 19365364-19370363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 10.0kb upstream 10.0kb upstream 20444 true Tp57577_TGAC_v2_LG2: 19344920-19365363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 19344920-19354919 Trifolium pratense
Tp57577_TGAC_v2_gene38344 10.0kb downstream 10.0kb downstream 20444 true Tp57577_TGAC_v2_LG2: 19354920-19375363 Trifolium pratense
Tp57577_TGAC_v2_gene38344 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 19365364-19375363 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302057 5265 Fabidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain