Gene : Tp57577_TGAC_v2_gene5393 T. pratense v2
Defline:  (1 of 1) PTHR23216 - NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 Genomic Order:  3067
Name:  ? Tp57577_TGAC_v2_gene5393 Secondary Identifier:  ? PAC:35970218
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene5393 0.5kb upstream 0.5kb upstream 3905 true Tp57577_TGAC_v2_LG2: 27785294-27789198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 27785294-27785793 Trifolium pratense
Tp57577_TGAC_v2_gene5393 0.5kb downstream 0.5kb downstream 3905 true Tp57577_TGAC_v2_LG2: 27785794-27789698 Trifolium pratense
Tp57577_TGAC_v2_gene5393 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 27789199-27789698 Trifolium pratense
Tp57577_TGAC_v2_gene5393 1.0kb upstream 1.0kb upstream 4405 true Tp57577_TGAC_v2_LG2: 27784794-27789198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 27784794-27785793 Trifolium pratense
Tp57577_TGAC_v2_gene5393 1.0kb downstream 1.0kb downstream 4405 true Tp57577_TGAC_v2_LG2: 27785794-27790198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 27789199-27790198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 2.0kb upstream 2.0kb upstream 5405 true Tp57577_TGAC_v2_LG2: 27783794-27789198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 27783794-27785793 Trifolium pratense
Tp57577_TGAC_v2_gene5393 2.0kb downstream 2.0kb downstream 5405 true Tp57577_TGAC_v2_LG2: 27785794-27791198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 27789199-27791198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 5.0kb upstream 5.0kb upstream 8405 true Tp57577_TGAC_v2_LG2: 27780794-27789198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 27780794-27785793 Trifolium pratense
Tp57577_TGAC_v2_gene5393 5.0kb downstream 5.0kb downstream 8405 true Tp57577_TGAC_v2_LG2: 27785794-27794198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 27789199-27794198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 10.0kb upstream 10.0kb upstream 13405 true Tp57577_TGAC_v2_LG2: 27775794-27789198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 27775794-27785793 Trifolium pratense
Tp57577_TGAC_v2_gene5393 10.0kb downstream 10.0kb downstream 13405 true Tp57577_TGAC_v2_LG2: 27785794-27799198 Trifolium pratense
Tp57577_TGAC_v2_gene5393 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 27789199-27799198 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304301 5265 Fabidae View MSA
124071277 5270 Rosid View MSA
123738497 5271 Pentapetalae View MSA
122794212 5272 Eudicot View MSA
122048501 5273 Angiosperm View MSA
121348991 5274 Embryophyte View MSA
123425594 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain