Gene : Tp57577_TGAC_v2_gene5319 T. pratense v2
Defline:  (1 of 1) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2565
Name:  ? Tp57577_TGAC_v2_gene5319 Secondary Identifier:  ? PAC:35971211
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CAROTENOID-PWY Trifolium pratense pathologic  
Tpratense PWY-6475 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene5319 0.5kb upstream 0.5kb upstream 4967 true Tp57577_TGAC_v2_LG2: 23973054-23978020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 23973054-23973553 Trifolium pratense
Tp57577_TGAC_v2_gene5319 0.5kb downstream 0.5kb downstream 4967 true Tp57577_TGAC_v2_LG2: 23973554-23978520 Trifolium pratense
Tp57577_TGAC_v2_gene5319 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 23978021-23978520 Trifolium pratense
Tp57577_TGAC_v2_gene5319 1.0kb upstream 1.0kb upstream 5467 true Tp57577_TGAC_v2_LG2: 23972554-23978020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 23972554-23973553 Trifolium pratense
Tp57577_TGAC_v2_gene5319 1.0kb downstream 1.0kb downstream 5467 true Tp57577_TGAC_v2_LG2: 23973554-23979020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 23978021-23979020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 2.0kb upstream 2.0kb upstream 6467 true Tp57577_TGAC_v2_LG2: 23971554-23978020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 23971554-23973553 Trifolium pratense
Tp57577_TGAC_v2_gene5319 2.0kb downstream 2.0kb downstream 6467 true Tp57577_TGAC_v2_LG2: 23973554-23980020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 23978021-23980020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 5.0kb upstream 5.0kb upstream 9467 true Tp57577_TGAC_v2_LG2: 23968554-23978020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 23968554-23973553 Trifolium pratense
Tp57577_TGAC_v2_gene5319 5.0kb downstream 5.0kb downstream 9467 true Tp57577_TGAC_v2_LG2: 23973554-23983020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 23978021-23983020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 10.0kb upstream 10.0kb upstream 14467 true Tp57577_TGAC_v2_LG2: 23963554-23978020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 23963554-23973553 Trifolium pratense
Tp57577_TGAC_v2_gene5319 10.0kb downstream 10.0kb downstream 14467 true Tp57577_TGAC_v2_LG2: 23973554-23988020 Trifolium pratense
Tp57577_TGAC_v2_gene5319 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 23978021-23988020 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain