Gene : Tp57577_TGAC_v2_gene6615 T. pratense v2
Defline:  (1 of 1) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  3471
Name:  ? Tp57577_TGAC_v2_gene6615 Secondary Identifier:  ? PAC:35971761
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7560 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene6615 0.5kb upstream 0.5kb upstream 3153 true Tp57577_TGAC_v2_LG2: 30857468-30860620 Trifolium pratense
Tp57577_TGAC_v2_gene6615 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 30860121-30860620 Trifolium pratense
Tp57577_TGAC_v2_gene6615 0.5kb downstream 0.5kb downstream 3153 true Tp57577_TGAC_v2_LG2: 30856968-30860120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 30856968-30857467 Trifolium pratense
Tp57577_TGAC_v2_gene6615 1.0kb upstream 1.0kb upstream 3653 true Tp57577_TGAC_v2_LG2: 30857468-30861120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 30860121-30861120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 1.0kb downstream 1.0kb downstream 3653 true Tp57577_TGAC_v2_LG2: 30856468-30860120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 30856468-30857467 Trifolium pratense
Tp57577_TGAC_v2_gene6615 2.0kb upstream 2.0kb upstream 4653 true Tp57577_TGAC_v2_LG2: 30857468-30862120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 30860121-30862120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 2.0kb downstream 2.0kb downstream 4653 true Tp57577_TGAC_v2_LG2: 30855468-30860120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 30855468-30857467 Trifolium pratense
Tp57577_TGAC_v2_gene6615 5.0kb upstream 5.0kb upstream 7653 true Tp57577_TGAC_v2_LG2: 30857468-30865120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 30860121-30865120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 5.0kb downstream 5.0kb downstream 7653 true Tp57577_TGAC_v2_LG2: 30852468-30860120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 30852468-30857467 Trifolium pratense
Tp57577_TGAC_v2_gene6615 10.0kb upstream 10.0kb upstream 12653 true Tp57577_TGAC_v2_LG2: 30857468-30870120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 30860121-30870120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 10.0kb downstream 10.0kb downstream 12653 true Tp57577_TGAC_v2_LG2: 30847468-30860120 Trifolium pratense
Tp57577_TGAC_v2_gene6615 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 30847468-30857467 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305262 5265 Fabidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain